Browse Element(s) Details


OsAffx.15867.1.S1_at

Description tigr:9634.m03927
TID=OsAffx.15867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4087011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40818OsAffx.5071.1.S1_s_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.51403.1.S1_at11/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818Os.6790.1.S1_at10/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40818OsAffx.988.1.S1_at1/116+24347662..24352979Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g40830Os.37083.2.S1_at1/116+24356542..24356868retrotransposon protein, putative, unclassified
LOC_Os06g40840Os.47954.1.S1_at11/116+24358245..24362678microtubule associated protein family protein, putative, expressed
LOC_Os06g40850Os.56087.1.S1_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40850OsAffx.15866.1.S1_x_at11/116+24363004..24365498IQ calmodulin-binding motif family protein, expressed
LOC_Os06g40860OsAffx.28029.1.S1_at11/116+24368838..24371851pentatricopeptide, putative, expressed
LOC_Os06g40870OsAffx.15867.1.S1_at11/116+24372218..24374215expressed protein
LOC_Os06g40870Os.55285.1.S1_at10/116+24372218..24374215expressed protein
LOC_Os06g40880Os.49993.1.S1_at9/116+24378830..24381171Polygalacturonase family protein, expressed
LOC_Os06g40890Os.53450.1.S1_at11/116+24383028..24385067Exopolygalacturonase precursor, putative, expressed
LOC_Os06g40900NANA6+24385490..24387005retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g40910Os.41883.1.S1_at1/116+24387284..24387874Cytidine and deoxycytidylate deaminase zinc-binding region family protein
LOC_Os06g40920OsAffx.28030.2.S1_x_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_s_at11/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.1.S1_x_at5/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40920OsAffx.28030.3.S1_at1/116+24389140..24393629Nucleosome assembly protein containing protein
LOC_Os06g40930OsAffx.15868.1.S1_at11/116+24395609..24396039hypothetical protein
LOC_Os06g40940Os.26642.1.S1_a_at11/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g40940OsAffx.23425.1.S1_at1/116+24398549..24405053Glycine dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15867.1.S1_at--332--5631Chr06:24373054..24373078 (25 bp)
GACACGCCCAACACCAAGGTAGCAG
LOC_Os06g40870
OsAffx.15867.1.S1_at--537--3271Chr06:24373046..24373070 (25 bp)
CAACACCAAGGTAGCAGGAGAGGAA
LOC_Os06g40870
OsAffx.15867.1.S1_at--543--5031Chr06:24373003..24373027 (25 bp)
GCAGTTGCAGAGGACGAGCTGCACA
LOC_Os06g40870
OsAffx.15867.1.S1_at--1096--5771Chr06:24372991..24373015 (25 bp)
GACGAGCTGCACAACAATGGCGGCC
LOC_Os06g40870
OsAffx.15867.1.S1_at--535--4531Chr06:24372969..24372993 (25 bp)
GCCCCAACTCCAAGGAACAGGAGAT
LOC_Os06g40870
OsAffx.15867.1.S1_at--14--4391Chr06:24372960..24372984 (25 bp)
CCAAGGAACAGGAGATCGTCGTGAT
LOC_Os06g40870
OsAffx.15867.1.S1_at--171--511Chr06:24372946..24372970 (25 bp)
ATCGTCGTGATCACCAAGGAGCAGG
LOC_Os06g40870
OsAffx.15867.1.S1_at--253--7211Chr06:24372901..24372925 (25 bp)
GTCGTTGACGACACCGCAGACGGCG
LOC_Os06g40870
OsAffx.15867.1.S1_at--1098--4691Chr06:24372861..24372885 (25 bp)
GCGGCGGCCATGATATCGCGCATGA
LOC_Os06g40870
OsAffx.15867.1.S1_at--458--6511Chr06:24372850..24372874 (25 bp)
GATATCGCGCATGAGGTAGAAGCCA
LOC_Os06g40870
OsAffx.15867.1.S1_at--684--9331Chr06:24372846..24372870 (25 bp)
TCGCGCATGAGGTAGAAGCCAAGCT
LOC_Os06g40870
Target Sequence 
GACACGCCCAACACCAAGGTAGCAGGAGAGGAAGAAGAAGGAGCACCTCTTGCAGTTGCAGAGGACGAGCTGCACAACAA
TGGCGGCCCCAACTCCAAGGAACAGGAGATCGTCGTGATCACCAAGGAGCAGGAAGCCGCCGCCATCACCGTCGTCGTTG
ACGACACCGCAGACGGCGACGGCGACGGCGACGGCGGCGGCCATGATATCGCGCATGAGGTAGAAGCCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis