Browse Element(s) Details


OsAffx.15870.1.S1_at

Description tigr:9634.m03948
TID=OsAffx.15870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bHLH protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4106010/11bHLH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41020OsAffx.28032.2.S1_at10/116+24494063..24499901expressed protein
LOC_Os06g41030OsAffx.28033.1.S1_x_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030OsAffx.28033.1.S1_s_at11/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41030Os.5721.1.A1_at9/116+24501393..24506550secreted protein, putative, expressed
LOC_Os06g41040OsAffx.5072.1.S1_at11/116+24509258..24511552pentatricopeptide, putative, expressed
LOC_Os06g41050Os.49902.1.S1_at11/116+24515545..24518259expressed protein
LOC_Os06g41060Os.4952.1.S1_at11/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41060OsAffx.15870.1.S1_at10/116+24521244..24526835bHLH transcription factor, putative, expressed
LOC_Os06g41070OsAffx.12985.3.S1_x_at11/116+24531077..24532738Cytochrome P450 family protein, expressed
LOC_Os06g41080OsAffx.19542.3.S1_x_at6/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080Os.49954.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41080OsAffx.9949.1.S1_at1/116+24541392..24551972retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15870.1.S1_at--1078--6311Chr06:24526220..24526451 (25 bp)
GATGCACTGTTTCTGTTCGGTCCAA
LOC_Os06g41060
OsAffx.15870.1.S1_at--221--9471Chr06:24526209..24526233 (25 bp)
TCTGTTCGGTCCAAAGGCACACTAG
LOC_Os06g41060
OsAffx.15870.1.S1_at--283--9771Chr06:24526169..24526193 (25 bp)
TAATGCCAAGCGTTGGTGTGCAGCA
LOC_Os06g41060
OsAffx.15870.1.S1_at--990--1511NONE
AGCAGCATGTGGTAGCTCCATTCTT
NONE
OsAffx.15870.1.S1_at--360--10551Chr06:24524803..24524827 (25 bp)
TTCTTGACTACGGAGGTACCATTAT
LOC_Os06g41060
OsAffx.15870.1.S1_at--265--6831Chr06:24524747..24524771 (25 bp)
GTTTAGCTTGCGTGGATTTACAACA
LOC_Os06g41060
OsAffx.15870.1.S1_at--514--8771Chr06:24524711..24524735 (25 bp)
TGTATATGTATTGCTCCCTTCTTGC
LOC_Os06g41060
OsAffx.15870.1.S1_at--1082--9571Chr06:24524692..24524716 (25 bp)
TCTTGCCCACATATCGACCTTTTTT
LOC_Os06g41060
OsAffx.15870.1.S1_at--165--8151Chr06:24524658..24524682 (25 bp)
GGAAAATGCTTTGATACTTCGCCAA
LOC_Os06g41060
OsAffx.15870.1.S1_at--433--9891Chr06:24524644..24524668 (25 bp)
TACTTCGCCAATACGCATATATCCG
LOC_Os06g41060
OsAffx.15870.1.S1_at--409--10171Chr06:24524627..24524651 (25 bp)
TATATCCGTATCAGTTGCCTATTGG
LOC_Os06g41060
Target Sequence 
GATGCACTGTTTCTGTTCGGTCCAAAGGCACACTAGGAGTCCAACAAAGAGTAATGCCAAGCGTTGGTGTGCAGCAGCAG
CAGCATGTGGTAGCTCCATTCTTTATATCCAAAACTGAGGTATCAGGAACAGCACTGGTACTGGATGAGATCATCAATCA
TGTCCAATCTCTTCAAAGGCAAGTTGAGTACTTGTCAATGAGGCTCGCAGCTGTAAATCCGAGGGTCGACTTTGGTGGGC
TAGACAACTTCTTGACTACGGAGGTACCATTATGACAAATACTGTTTCTTGAAGATTTCTGCAAGTTTAGCTTGCGTGGA
TTTACAACAACAATTTCCTGTGTATATGTATTGCTCCCTTCTTGCCCACATATCGACCTTTTTTTTTAATACTGGAAAAT
GCTTTGATACTTCGCCAATACGCATATATCCGTATCAGTTGCCTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis