Browse Element(s) Details


OsAffx.15909.1.S1_at

Description tigr:9634.m04192
TID=OsAffx.15909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4342011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43370OsAffx.15908.2.S1_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.15908.2.S1_x_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.26754.1.S1_x_at1/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15909.1.S1_at--731--6991Chr06:26096654..26096678 (25 bp)
GTACGACGAGAGCTCATCGGGCATC
LOC_Os06g43420
OsAffx.15909.1.S1_at--1051--7951Chr06:26096549..26096573 (25 bp)
GGATCATTGCTGCTACCACGGGAAT
LOC_Os06g43420
OsAffx.15909.1.S1_at--830--5791Chr06:26096521..26096545 (25 bp)
GACGCACGTGCCAAGTCCTAGGATA
LOC_Os06g43420
OsAffx.15909.1.S1_at--1016--3971Chr06:26096476..26096500 (25 bp)
CGGTGTTTGTTAACGTATCGGCTAT
LOC_Os06g43420
OsAffx.15909.1.S1_at--204--6911Chr06:26096462..26096486 (25 bp)
GTATCGGCTATTGGTAGGGATCCCA
LOC_Os06g43420
OsAffx.15909.1.S1_at--554--931Chr06:26096373..26096397 (25 bp)
AGGCACACATTTTGAGTACACACCA
LOC_Os06g43420
OsAffx.15909.1.S1_at--497--7032Chr11:1141023..1141042 (20 bp)
GTACACACCATTTGGAGCAGGTCGG
NONE
OsAffx.15909.1.S1_at--745--8591Chr06:26096310..26096334 (25 bp)
TGGTCTAGCCAATGTGGAGCTCACA
LOC_Os06g43420
OsAffx.15909.1.S1_at--1025--171Chr06:26096266..26096290 (25 bp)
ATTTCAACTGGGAACTGCCGAGCGG
LOC_Os06g43420
OsAffx.15909.1.S1_at--495--7951Chr06:26096242..26096266 (25 bp)
GGATACACGCTGAGAACCTAGACAT
LOC_Os06g43420
OsAffx.15909.1.S1_at--753--6171Chr06:26096213..26096237 (25 bp)
GAGGAGATGCGATTCACCACGCGGC
LOC_Os06g43420
Target Sequence 
GTACGACGAGAGCTCATCGGGCATCGTAAAGTGACAGAAGATACCCTATGTAGACTGAATTACATGCATATGGTCATCAA
GGAGGCACTCCGGCTACACCCACCGGGATCATTGCTGCTACCACGGGAATGCCGACGCACGTGCCAAGTCCTAGGATACG
ATATACCCAAGGGAGCAACGGTGTTTGTTAACGTATCGGCTATTGGTAGGGATCCCAAGTACTGGGACGAAGCTGAAGAG
TTTATTCCAGAGAGGTTTGAGCATAGTGATGTTGACTTTAAAGGCACACATTTTGAGTACACACCATTTGGAGCAGGTCG
GAGGATGTGCCCTGGCATGGCGTTTGGTCTAGCCAATGTGGAGCTCACATTAGCGAGCCTCCTGTACCATTTCAACTGGG
AACTGCCGAGCGGGATACACGCTGAGAACCTAGACATGACAGAGGAGATGCGATTCACCACGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis