Browse Element(s) Details


OsAffx.15911.1.S1_x_at

Description tigr:9634.m04216
TID=OsAffx.15911.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=sucrose-phosphate synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4363011/11Sucrose-phosphate synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15911.1.S1_x_at--620--5171Chr06:26242809..26242833 (25 bp)
GAAGTGGGCTTCTTCCGTGGTAGAA
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--301--10171Chr06:26242758..26242782 (25 bp)
TATCTTCGAAGATCCAGAGCACTCT
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--331--5951Chr06:26242742..26242766 (25 bp)
GAGCACTCTTCAACATACTGTCTTG
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--986--5951Chr06:26242491..26242515 (25 bp)
GAGAATTCAGTCACTCCGTTGTCAC
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--748--10811Chr06:26242473..26242497 (25 bp)
TTGTCACGCTCTGTATAACCATGGT
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--443--5691Chr06:26242441..26242465 (25 bp)
GACTATCTGTAATTCCAATCCACGC
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--256--1851Chr06:26242420..26242444 (25 bp)
ACGCATCACGGTCTAAGGCTCTAAG
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--187--3731Chr06:26241821..26241842 (22 bp)
CTAAGGTACTTATCTGTTCGCTGGG
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--656--7711Chr06:26241699..26241723 (25 bp)
GGGTGAATTCAACACATCTGCAAAT
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--967--5251Chr06:26241673..26241697 (25 bp)
GAATCCATTCTGTTAGGCGGTATCC
LOC_Os06g43630
OsAffx.15911.1.S1_x_at--307--6291Chr06:26241641..26241665 (25 bp)
GATGTTGTTGCACTTGATAGCCCAA
LOC_Os06g43630
Target Sequence 
GAAGTGGGCTTCTTCCGTGGTAGAAAGAAGAGGGAGGATTGAAAAACAAGTTATCTTCGAAGATCCAGAGCACTCTTCAA
CATACTGTCTTGCATTTAAAGTGGTCAATCCAAATCATTTACCTCCTTTAAAGGAGCTGCAAAAGTTGATGAGAATTCAG
TCACTCCGTTGTCACGCTCTGTATAACCATGGTGCTACCAGACTATCTGTAATTCCAATCCACGCATCACGGTCTAAGGC
TCTAAGGTACTTATCTGTTCGCTGGGGCATAGAGTTGCAAAATGTGGTGGTTCTTGTTGGTGAAACTGGTGATTCAGATT
ACGAAGAATTGTTTGGAGGTCTTCATAAGACGGTCATCCTTAAGGGTGAATTCAACACATCTGCAAATAGAATCCATTCT
GTTAGGCGGTATCCTTTACAAGATGTTGTTGCACTTGATAGCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15911.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis