Browse Element(s) Details


OsAffx.15943.1.S1_x_at

Description tigr:9634.m04470
TID=OsAffx.15943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-regulated protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4597011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45960OsAffx.5120.1.S1_x_at11/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45960Os.55740.1.S1_at10/116+27843658..27847258Cytochrome P450 family protein, expressed
LOC_Os06g45970OsAffx.15943.1.S1_x_at11/116+27861250..27861651Auxin responsive protein, expressed
LOC_Os06g45980Os.8522.1.S1_at11/116+27866664..27873405toprim domain-containing protein, putative, expressed
LOC_Os06g45990Os.7619.1.S1_s_at11/116+27874367..27876422CRAL/TRIO, N-terminus family protein, expressed
LOC_Os06g46000Os.12811.2.S1_x_at10/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.1.S1_at9/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46000Os.12811.2.S1_at1/116+27876528..27879132Tubulin beta-3 chain, putative, expressed
LOC_Os06g46010NANA6+27881060..27881350hypothetical protein
LOC_Os06g46020OsAffx.5121.1.S1_at11/116+27883600..27883983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15943.1.S1_x_at--316--711Chr06:27861355..27861379 (25 bp)
ATGAGGAGGCTGAGCTTCTCGGACC
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--847--7691Chr06:27861559..27861583 (25 bp)
GGGTACAAGCAGGAGGGCATCCTCC
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--23--1091Chr06:27861572..27861596 (25 bp)
AGGGCATCCTCCGTGTGCCCTGCGA
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--169--7471Chr06:27861584..27861608 (25 bp)
GTGTGCCCTGCGACGTCAGCCATTT
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--910--8691Chr06:27861585..27861609 (25 bp)
TGTGCCCTGCGACGTCAGCCATTTC
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--769--9151Chr06:27861592..27861616 (25 bp)
TGCGACGTCAGCCATTTCCAGCAAG
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--187--4611Chr06:27861593..27861617 (25 bp)
GCGACGTCAGCCATTTCCAGCAAGT
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--46--4091Chr06:27861594..27861618 (25 bp)
CGACGTCAGCCATTTCCAGCAAGTC
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--347--5771Chr06:27861595..27861619 (25 bp)
GACGTCAGCCATTTCCAGCAAGTCC
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--1018--1891Chr06:27861596..27861620 (25 bp)
ACGTCAGCCATTTCCAGCAAGTCCT
LOC_Os06g45970
OsAffx.15943.1.S1_x_at--199--4011Chr06:27861597..27861621 (25 bp)
CGTCAGCCATTTCCAGCAAGTCCTC
LOC_Os06g45970
Target Sequence 
ATGAGGAGGCTGAGCTTCTCGGACCGCGCGGGCGGCGGCGGCGGCGGCGACGGCGTGCCGCGCGGGTGCGTGCCGGTGAT
GGTGGGGGACAACGGCGGCGACGGCGATGGCGGCGGCGGCGGCGGCGAGCGGTTCGTGGTGCGGGTGGAGGCGCTGCGGC
ACCCGGCGTTCGCGGCGCTGCTGGAGAAGGCGGCGCAGGAGTTCGGGTACAAGCAGGAGGGCATCCTCCGTGTGCCCTGC
GACGTCAGCCATTTCCAGCAAGTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15943.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis