Browse Element(s) Details


OsAffx.16171.1.S1_s_at

Description tigr:9635.m00890
TID=OsAffx.16171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09230Os.28943.1.S1_x_at1/117+4834922..4838164retrotransposon protein, putative, unclassified
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified
LOC_Os07g09250OsAffx.16169.1.S1_at11/117+4848566..4849210hypothetical protein
LOC_Os07g09260NANA7+4850081..4850729NA
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein
LOC_Os07g09280OsAffx.16171.1.S1_s_at11/117+4861486..4862611expressed protein
LOC_Os07g09280OsAffx.16171.1.S1_at11/117+4861486..4862611expressed protein
LOC_Os07g09290OsAffx.28359.1.S1_at11/117+4863336..4864648hypothetical protein
LOC_Os07g09300OsAffx.31767.1.S1_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.1.S1_x_at11/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_x_at7/117+4866657..4878563POT family protein, expressed
LOC_Os07g09300OsAffx.31767.2.S1_at4/117+4866657..4878563POT family protein, expressed
LOC_Os07g09310OsAffx.28360.1.S1_at11/117+4878870..4881033Thioredoxin family protein, expressed
LOC_Os07g09320Os.18245.1.S1_at10/117+4881117..4888386expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16171.1.S1_s_at--44--2831Chr07:4862025..4862049 (25 bp)
AAGTTGCTGCATCACTTTTAGCCCA
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--431--4951Chr07:4862033..4862057 (25 bp)
GCATCACTTTTAGCCCACCTGAAAA
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--793--7571Chr07:4862200..4862224 (25 bp)
GGGCTGGCAGATTACCTTGGATTAT
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--556--4871Chr07:4862265..4862289 (25 bp)
GCTATTTTGGTCTAAACAATGGCAA
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--180--8771Chr07:4862293..4862317 (25 bp)
TGTATCTGGTACTGCAGCTTCCATA
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--197--791Chr07:4862325..4862349 (25 bp)
ATGTGTTTCACCTTGGTGAGTGGAT
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--89--7371Chr07:4862352..4862376 (25 bp)
GTGAAACAGCATTTGCAGGAACTGC
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--325--9051Chr07:4862365..4862389 (25 bp)
TGCAGGAACTGCAGACTTGCAAGAC
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--830--5671Chr07:4862378..4862402 (25 bp)
GACTTGCAAGACACAACTGAGCGAA
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--64--9851Chr07:4862497..4862521 (25 bp)
TAAATTGCTTTGGTGTTAGTCTCAT
LOC_Os07g09280
OsAffx.16171.1.S1_s_at--516--10051Chr07:4862513..4862537 (25 bp)
TAGTCTCATGCATGTCTAGTGGGAT
LOC_Os07g09280
Target Sequence 
AAGTTGCTGCATCACTTTTAGCCCACCTGAAAAAAGAAAGAAAGGTCGTTGTAGTGGATGATAACTATATGGAGTGTGCT
TATTACAGAAAGGATTGTAGGAAGCTAAGACGTTTTATATCTAAGGTAGTTGAAAAGCGTGATTCTGCAATGCATGCATG
CTCTGCTTTCAAGAGGGGCTGGCAGATTACCTTGGATTATATGACCTCCACTGAGGATACATGCAATCAAATTTGTAATA
GCTATTTTGGTCTAAACAATGGCAATAATGTATCTGGTACTGCAGCTTCCATACTGCTTGATGTGTTTCACCTTGGTGAG
TGGATTGGTGAAACAGCATTTGCAGGAACTGCAGACTTGCAAGACACAACTGAGCGAATGTTGTAGAATGCAGGGATGTT
GTTCTTATCCATTGTTGAAACCAAGGGTTGCATCTTTTCATTGGTGTATGAAATGTAGGTGTTTGTGCAATCTAAATTGC
TTTGGTGTTAGTCTCATGCATGTCTAGTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16171.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis