Browse Element(s) Details


OsAffx.16516.1.S1_x_at

Description tigr:9635.m03150
TID=OsAffx.16516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3208011/11Transcription factor TFIIB repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32020Os.8143.1.S1_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020Os.8143.1.S2_at11/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.24603.1.S1_x_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32020OsAffx.12168.1.S1_at1/117+19044137..19046474UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32040NANA7+19051935..19054261PCI domain containing protein
LOC_Os07g32050OsAffx.16515.1.S1_at11/117+19056349..19058158hypothetical protein
LOC_Os07g32060Os.54472.1.S1_at11/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32060OsAffx.24603.1.S1_x_at1/117+19059068..19060852UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32070OsAffx.28706.1.S1_at11/117+19062966..19064012hypothetical protein
LOC_Os07g32080OsAffx.16516.1.S1_x_at11/117+19066616..19067680Transcription factor TFIIB repeat family protein
LOC_Os07g32090NANA7+19068709..19071327hypothetical protein
LOC_Os07g32100OsAffx.31018.3.S1_x_at11/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.4.S1_at4/117+19071668..19073089hypothetical protein
LOC_Os07g32100OsAffx.31018.2.S1_x_at1/117+19071668..19073089hypothetical protein
LOC_Os07g32110Os.45774.1.S1_at1/117+19073800..19076846transposon protein, putative, unclassified
LOC_Os07g32120NANA7+19081963..19082994Transcription factor TFIIB repeat family protein
LOC_Os07g32140OsAffx.16517.1.S1_at11/117+19089523..19090179hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16516.1.S1_x_at--674--6171Chr07:19067114..19067138 (25 bp)
GAGGAGGCCAAGGTTTGCGCCAGGG
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--376--9211Chr07:19067172..19067196 (25 bp)
TCCACACCGCGTGCCGCATGGAGGG
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--979--8631Chr07:19067262..19067286 (25 bp)
TGGGCAAGTTCATCCACGCGATCAA
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--828--3211Chr07:19067284..19067308 (25 bp)
CAAGAGGCTCCTCGGGAGCAACGAT
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--1126--6211Chr07:19067318..19067342 (25 bp)
GAGGCCGGGCAGGATCAAGCGGGCA
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--123--371Chr07:19067331..19067355 (25 bp)
ATCAAGCGGGCAGCAAGGCGACGAA
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--1158--1471Chr07:19067399..19067423 (25 bp)
AGCAACTACCTGCTCCGCTACGGGT
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--748--3931Chr07:19067469..19067493 (25 bp)
CGGCGAGCAGGCTGGACGAGAGCCT
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--269--3951Chr07:19067569..19067593 (25 bp)
CGGCAGGAGCAAGAGCGTCCGCGAG
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--397--2771Chr07:19067579..19067603 (25 bp)
AAGAGCGTCCGCGAGGTGTCCGCCG
LOC_Os07g32080
OsAffx.16516.1.S1_x_at--809--7571Chr07:19067608..19067632 (25 bp)
GGGCGTCAGCGAATCGACCATCAAG
LOC_Os07g32080
Target Sequence 
GAGGAGGCCAAGGTTTGCGCCAGGGGGCGGAGCCGGGACGCGCTCTACGCGGCGTGCCTCCACACCGCGTGCCGCATGGA
GGGCGCGCCGCGGACGCTCAAGGAGCTCATCGCCGCGACGCCCGACGCGGCGGCGACGAAGAGGAACCTGGGCAAGTTCA
TCCACGCGATCAAGAGGCTCCTCGGGAGCAACGATGAGGAGGCCGAGGCCGGGCAGGATCAAGCGGGCAGCAAGGCGACG
AACGGCTGCGGCGGTGGCGGCGGCGCCGGCGCGGTGGTGCGCGCCAGCAACTACCTGCTCCGCTACGGGTCGGCGGTCGG
GATGAGCGGCCAGGAGGTGAGCGCGGCGCAGCGCGCGGCGAGCAGGCTGGACGAGAGCCTCGACGTGCGGCGAAACCCGC
AGTCCATCGCGGCCGCCATCATCTACATGGCCGTGCAGCGCGCCGGCGGCGGCGGCGGCAGGAGCAAGAGCGTCCGCGAG
GTGTCCGCCGCCACGGGCGTCAGCGAATCGACCATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16516.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis