Browse Element(s) Details


OsAffx.16632.1.S1_at

Description tigr:9635.m03911
TID=OsAffx.16632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3925011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein
LOC_Os07g39270Os.23416.2.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_x_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39270Os.23416.1.S1_at11/117+23505158..23507599Geranylgeranyl pyrophosphate synthetase, chloroplast precursor, putative, expressed
LOC_Os07g39280Os.47410.1.S1_at11/117+23510217..23513938expressed protein
LOC_Os07g39290Os.54465.1.S1_at3/117+23520752..23523628RuvB-like 2, putative, expressed
LOC_Os07g39290Os.49478.1.S1_at1/117+23520752..23523628RuvB-like 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16632.1.S1_at--745--3791Chr07:23495859..23495883 (25 bp)
CTCGACGTCGAAGCAGGAGGTGTTC
LOC_Os07g39250
OsAffx.16632.1.S1_at--354--6731Chr07:23495838..23495862 (25 bp)
GTTCTTCGTTGAACAGAAGGCGGCA
LOC_Os07g39250
OsAffx.16632.1.S1_at--966--9431Chr07:23495752..23495776 (25 bp)
TCGGCCTCGTGAAGGAGTGGTTCCT
LOC_Os07g39250
OsAffx.16632.1.S1_at--315--2671Chr07:23495684..23495708 (25 bp)
AAGCCCCTCAGGAACGCGTACTACG
LOC_Os07g39250
OsAffx.16632.1.S1_at--307--6151Chr07:23495603..23495627 (25 bp)
GAGGTGTACATCTACCGGCCCGAGG
LOC_Os07g39250
OsAffx.16632.1.S1_at--16--8671Chr07:23495517..23495541 (25 bp)
TGTGGCGCTCGCCTTGTTGATCTAC
LOC_Os07g39250
OsAffx.16632.1.S1_at--42--10791Chr07:23495501..23495525 (25 bp)
TTGATCTACGTGCAGCAACGCTGGA
LOC_Os07g39250
OsAffx.16632.1.S1_at--741--5051Chr07:23495490..23495514 (25 bp)
GCAGCAACGCTGGAACTACAAGATT
LOC_Os07g39250
OsAffx.16632.1.S1_at--829--2811Chr07:23495471..23495495 (25 bp)
AAGATTGTTGGTTGGTCGTTGCTGA
LOC_Os07g39250
OsAffx.16632.1.S1_at--675--1931Chr07:23495444..23495468 (25 bp)
ACGGAAGCACGTCTACTGATCATGA
LOC_Os07g39250
OsAffx.16632.1.S1_at--997--5491Chr07:23495416..23495440 (25 bp)
GAACAGTGGTCTTTGTCGCTGTAGA
LOC_Os07g39250
Target Sequence 
CTCGACGTCGAAGCAGGAGGTGTTCTTCGTTGAACAGAAGGCGGCAGCGGCGTCGCACGCGCCGCCGTCGTGCATGCGCA
CGAGGGGCGCCGTCGTGGAGCGCTACGTCGGCCTCGTGAAGGAGTGGTTCCTGCTGCCGCAGGTGATCGGCAACGCCGTG
TGGCGCGTCAACTGCAAGCCCCTCAGGAACGCGTACTACGGCGGCGTCACCGCCGTGTGGATGCTGCCACACGTCTACCG
CTATCTCCGGCCGCCGGAGGTGTACATCTACCGGCCCGAGGTGCAGGACGACGCCATGGCCTTCTACGAGAAGGCCACCG
ACGTGGTGGTGCCGGTCGTTGCTGTGGCGCTCGCCTTGTTGATCTACGTGCAGCAACGCTGGAACTACAAGATTGTTGGT
TGGTCGTTGCTGAGAACGGAAGCACGTCTACTGATCATGACAAGAACAGTGGTCTTTGTCGCTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis