Browse Element(s) Details


OsAffx.16663.4.S1_at

Description tigr:9630.m04575
TID=OsAffx.16663.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46980Os.5377.1.S1_at11/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5377.2.S1_x_at10/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980OsAffx.23312.1.S1_s_at2/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46980Os.5391.1.S1_at1/112+28675812..28677978pentatricopeptide, putative, expressed
LOC_Os02g46990Os.12949.1.S1_at11/112+28683631..28688289ATPase, AAA family protein, expressed
LOC_Os02g47000Os.10594.1.S1_at11/112+28688829..28690578expressed protein
LOC_Os02g47010Os.5837.1.S1_at10/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47010OsAffx.12532.1.S1_at2/112+28690809..28694497secretory carrier membrane protein, putative, expressed
LOC_Os02g47020Os.46383.2.A1_s_at11/112+28695935..28698540Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os02g47030Os.25469.1.S1_at11/112+28698849..28700331expressed protein
LOC_Os02g47040OsAffx.16663.1.S1_s_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.4.S1_at11/112+28700618..28702204hypothetical protein
LOC_Os02g47040OsAffx.16663.1.S1_x_at5/112+28700618..28702204hypothetical protein
LOC_Os02g47060Os.53524.1.S1_at11/112+28720914..28725064WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16663.4.S1_at--737--4611Chr02:28700681..28700705 (25 bp)
GCGAGCGCAGCAGCCATAGGCGGAG
LOC_Os02g47040
OsAffx.16663.4.S1_at--172--4591Chr02:28700685..28700707 (23 bp)
GCGCAGCAGCCATAGGCGGAGCGAC
LOC_Os02g47040
OsAffx.16663.4.S1_at--184--4731Chr02:28701032..28701056 (25 bp)
GCTGGTGGACAAGCACTCGCGTAGG
LOC_Os02g47040
OsAffx.16663.4.S1_at--917--2211Chr02:28701040..28701064 (25 bp)
ACAAGCACTCGCGTAGGCGCGCAAG
LOC_Os02g47040
OsAffx.16663.4.S1_at--495--2731Chr02:28701042..28701066 (25 bp)
AAGCACTCGCGTAGGCGCGCAAGGA
LOC_Os02g47040
OsAffx.16663.4.S1_at--980--1491Chr02:28701043..28701067 (25 bp)
AGCACTCGCGTAGGCGCGCAAGGAC
LOC_Os02g47040
OsAffx.16663.4.S1_at--32--3811Chr02:28701092..28701116 (25 bp)
CTCCGCGTTCGTCTCGTTTGTCGAG
LOC_Os02g47040
OsAffx.16663.4.S1_at--775--9291Chr02:28701093..28701117 (25 bp)
TCCGCGTTCGTCTCGTTTGTCGAGG
LOC_Os02g47040
OsAffx.16663.4.S1_at--1015--4211Chr02:28701094..28701118 (25 bp)
CCGCGTTCGTCTCGTTTGTCGAGGC
LOC_Os02g47040
OsAffx.16663.4.S1_at--1041--4631Chr02:28701096..28701120 (25 bp)
GCGTTCGTCTCGTTTGTCGAGGCCG
LOC_Os02g47040
OsAffx.16663.4.S1_at--644--4031Chr02:28701097..28701121 (25 bp)
CGTTCGTCTCGTTTGTCGAGGCCGA
LOC_Os02g47040
Target Sequence 
GCGAGCGCAGCAGCCATAGGCGGAGCGACGGCGAACGACACGACGGCACCGGCGAAGCCTGCCGGGGCCGGGCCACAGCT
GAAGCTGCTGGTGGACAAGCACTCGCGTAGGCGCGCAAGGACGCGGTGGACTTCCTCATCAGCCTCCTCCGCGTTCGTCT
CGTTTGTCGAGGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16663.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis