Browse Element(s) Details


OsAffx.16668.2.S1_at

Description tigr:9635.m04098
TID=OsAffx.16668.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4097411/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16668.2.S1_at--116--3411Chr07:24525655..24525846 (25 bp)
CAGCAGCACCAAGTATGCAGGAACT
LOC_Os07g40974
OsAffx.16668.2.S1_at--767--10131Chr07:24525642..24525666 (25 bp)
TATGCAGGAACTGACGGCATGCGTC
LOC_Os07g40974
OsAffx.16668.2.S1_at--742--8171Chr07:24525636..24525660 (25 bp)
GGAACTGACGGCATGCGTCCTAGAT
LOC_Os07g40974
OsAffx.16668.2.S1_at--269--3531Chr07:24525625..24525649 (25 bp)
CATGCGTCCTAGATTCCTAGGACAA
LOC_Os07g40974
OsAffx.16668.2.S1_at--1019--6571Chr07:24525614..24525638 (25 bp)
GATTCCTAGGACAACTTGTTACTGT
LOC_Os07g40974
OsAffx.16668.2.S1_at--202--10091Chr07:24525608..24525632 (25 bp)
TAGGACAACTTGTTACTGTTCATGC
LOC_Os07g40974
OsAffx.16668.2.S1_at--243--8151Chr07:24525606..24525630 (25 bp)
GGACAACTTGTTACTGTTCATGCGA
LOC_Os07g40974
OsAffx.16668.2.S1_at--14--2211Chr07:24525604..24525628 (25 bp)
ACAACTTGTTACTGTTCATGCGAGT
LOC_Os07g40974
OsAffx.16668.2.S1_at--787--2511Chr07:24525602..24525626 (25 bp)
AACTTGTTACTGTTCATGCGAGTAA
LOC_Os07g40974
OsAffx.16668.2.S1_at--799--6771Chr07:24525597..24525621 (25 bp)
GTTACTGTTCATGCGAGTAATCATG
LOC_Os07g40974
OsAffx.16668.2.S1_at--569--8791Chr07:24525592..24525616 (25 bp)
TGTTCATGCGAGTAATCATGTAACT
LOC_Os07g40974
Target Sequence 
CAGCAGCACCAAGTATGCAGGAACTGACGGCATGCGTCCTAGATTCCTAGGACAACTTGTTACTGTTCATGCGAGTAATC
ATGTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16668.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis