Browse Element(s) Details


OsAffx.16689.1.S1_at

Description tigr:9635.m04311
TID=OsAffx.16689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g430104/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g43010Os.15811.1.S1_at10/117+25760117..25763970expressed protein
LOC_Os07g43010OsAffx.16689.1.S1_at4/117+25760117..25763970expressed protein
LOC_Os07g43020Os.51780.1.S1_at11/117+25772775..25773645expressed protein
LOC_Os07g43030Os.7722.1.S1_at11/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43030OsAffx.5617.1.S1_x_at10/117+25774503..25781679CG-1 domain containing protein, expressed
LOC_Os07g43040Os.50778.1.S1_at11/117+25788696..25791003heavy metal-associated domain containing protein, expressed
LOC_Os07g43040Os.49483.2.S1_x_at5/117+25788696..25791003heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16689.1.S1_at--313--4491NONE
GACGTCTGGAAATCGAAGTTGGCTG
NONE
OsAffx.16689.1.S1_at--393--4111Chr07:25761927..25761951 (25 bp)
CGAAGTTGGCTGTCAATCGCTACAT
LOC_Os07g43010
OsAffx.16689.1.S1_at--641--6611Chr07:25761923..25761947 (25 bp)
GTTGGCTGTCAATCGCTACATTTTA
LOC_Os07g43010
OsAffx.16689.1.S1_at--192--8351Chr07:25761920..25761944 (25 bp)
GGCTGTCAATCGCTACATTTTATTG
LOC_Os07g43010
OsAffx.16689.1.S1_at--146--3051Chr07:25761913..25761937 (25 bp)
AATCGCTACATTTTATTGAACTATC
LOC_Os07g43010
OsAffx.16689.1.S1_at--614--551NONE
ATCCAAATGAATTTAAGCCCTATCC
NONE
OsAffx.16689.1.S1_at--240--7491NONE
GTGGATGGTTGAACGGCTTGTTCAA
NONE
OsAffx.16689.1.S1_at--315--5451Chr07:25759956..25759980 (25 bp)
GAACGGCTTGTTCAACGTGATGCCA
NONE
OsAffx.16689.1.S1_at--253--4931Chr07:25759951..25759975 (25 bp)
GCTTGTTCAACGTGATGCCAGGCTT
NONE
OsAffx.16689.1.S1_at--221--8791Chr07:25759948..25759972 (25 bp)
TGTTCAACGTGATGCCAGGCTTATT
NONE
OsAffx.16689.1.S1_at--57--2591Chr07:25759943..25759967 (25 bp)
AACGTGATGCCAGGCTTATTTCTGG
NONE
Target Sequence 
GACGTCTGGAAATCGAAGTTGGCTGTCAATCGCTACATTTTATTGAACTATCAATTTTATCCAAATGAATTTAAGCCCTA
TCCCCTAAGGATGGCTATGCTTACGACAATCTATGGGTTTGGCCTTTACAAGTGGTGGATGGTTGAACGGCTTGTTCAAC
GTGATGCCAGGCTTATTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis