Browse Element(s) Details


OsAffx.16829.1.S1_s_at

Description tigr:9636.m00400
TID=OsAffx.16829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0474011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04700OsAffx.29034.1.S1_at11/118+2335365..2335901hypothetical protein
LOC_Os08g04710OsAffx.29035.1.S1_at11/118+2337777..2338343hypothetical protein
LOC_Os08g04720OsAffx.22848.4.S1_at2/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.4.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04720OsAffx.22848.3.S1_x_at1/118+2344206..2347164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04730NANA8+2351089..2354941retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04740OsAffx.16829.1.S1_s_at11/118+2359067..2359707expressed protein
LOC_Os08g04750NANA8+2362664..2363416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04760NANA8+2365652..2368088hypothetical protein
LOC_Os08g04770OsAffx.29036.1.S1_at11/118+2375811..2378817AMP-binding enzyme family protein, expressed
LOC_Os08g04780Os.7610.1.S1_a_at11/118+2379191..2382932amine oxidase, flavin-containing family protein, expressed
LOC_Os08g04790Os.8351.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04790Os.51140.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16829.1.S1_s_at--567--4391Chr08:2359406..2359430 (25 bp)
GCCAACGAGCGGGTCACGTACAACG
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--436--3951Chr08:2359397..2359421 (25 bp)
CGGGTCACGTACAACGGGTCGCTCT
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--267--8651Chr08:2359309..2359333 (25 bp)
TGGGCGCCGTCCTGAACAAGCTCGG
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--230--9271Chr08:2359300..2359324 (25 bp)
TCCTGAACAAGCTCGGCGCCTGCAG
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--357--5791Chr08:2359256..2359280 (25 bp)
GACGACTACATGAGCGGCCTCCTCG
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--794--6631Chr08:2359185..2359209 (25 bp)
GTTGTACGCCATGGTTCTCGTTGAC
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--444--8571Chr08:2359174..2359198 (25 bp)
TGGTTCTCGTTGACCGCAACAAGGT
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--271--7571Chr08:2359148..2359172 (25 bp)
GGGCTAGCGTTGTTCCTCGGTAAAT
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--1023--6692Chr03:16118911..16118933 (22 bp)
GTTCCTCGGTAAATTGTTGGGCATA
NONE
OsAffx.16829.1.S1_s_at--12--6631Chr08:2359122..2359146 (25 bp)
GTTGGGCATATGACTTGATTAATAC
LOC_Os08g04740
OsAffx.16829.1.S1_s_at--286--5691Chr08:2359111..2359135 (25 bp)
GACTTGATTAATACTACTATGTGGT
LOC_Os08g04740
Target Sequence 
GCCAACGAGCGGGTCACGTACAACGGGTCGCTCTCCGGCGAGGAGAAGGGCGCGTACGAGGGGTGCGTGGAGGCGTACGC
GGCGGCCGAGCACGCCATGGGCGCCGTCCTGAACAAGCTCGGCGCCTGCAGCTTCGGCGGCGGCCTCGCCGACGACTACA
TGAGCGGCCTCCTCGCCGTCGAGAGCTGCAGGGACCGCGTGATCAAGCTGCCGGCGTCGCCGTTGTACGCCATGGTTCTC
GTTGACCGCAACAAGGTGGGGCTAGCGTTGTTCCTCGGTAAATTGTTGGGCATATGACTTGATTAATACTACTATGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16829.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis