Browse Element(s) Details


OsAffx.16831.1.S1_at

Description tigr:9636.m00408
TID=OsAffx.16831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g155101/11transposon protein, putative, unclassified
LOC_Os01g166601/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15480OsAffx.29218.1.S1_s_at8/118+9412386..9413252hypothetical protein
LOC_Os08g15480OsAffx.29576.2.S1_x_at1/118+9412386..9413252hypothetical protein
LOC_Os08g15490NANA8+9413986..9415007hypothetical protein
LOC_Os08g15500Os.14157.1.S1_at11/118+9418417..9422130expressed protein
LOC_Os08g15510OsAffx.29842.2.S1_x_at10/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.2.S1_at9/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_x_at5/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_at4/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.16831.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15520OsAffx.27865.1.S1_x_at1/118+9435832..9438044transposon protein, putative, Pong sub-class
LOC_Os08g15530NANA8+9438757..9440173hypothetical protein
LOC_Os08g15540OsAffx.17011.1.S1_at11/118+9442287..9442769hypothetical protein
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16831.1.S1_at--93--2311Chr08:2422641..2422665 (25 bp)
AAAGGAACTCATCATCAGATATGTG
NONE
OsAffx.16831.1.S1_at--505--7031Chr08:2423059..2423083 (25 bp)
GTACACCAAGGCCAAAAGCAGAGTT
NONE
OsAffx.16831.1.S1_at--365--3091Chr08:2423213..2423237 (25 bp)
AATAAAGTCTCATGGTAAGCATCAT
NONE
OsAffx.16831.1.S1_at--697--3513Chr09:7081518..7081538 (21 bp)
CATGTTGTTAAATTCTCACCATTGG
NONE
OsAffx.16831.1.S1_at--1004--92Chr09:7081525..7081549 (25 bp)
ATTCTCACCATTGGAATCTAGTGTC
NONE
OsAffx.16831.1.S1_at--426--452Chr09:7081540..7081564 (25 bp)
ATCTAGTGTCAAATGCAGCTGCAAG
NONE
OsAffx.16831.1.S1_at--537--4272Chr09:7081585..7081609 (25 bp)
CCTGTGCTCTCATGCCCTGAAAGTA
NONE
OsAffx.16831.1.S1_at--488--9172Chr09:7081597..7081621 (25 bp)
TGCCCTGAAAGTACTTGACATCAAT
NONE
OsAffx.16831.1.S1_at--317--2092Chr08:2423350..2423371 (22 bp)
ACATCAAATCAGTTCCTCAAATAAG
NONE
OsAffx.16831.1.S1_at--920--4911Chr08:2423584..2423608 (25 bp)
GCTTGAAAATCAGATGCAATCCAGA
NONE
OsAffx.16831.1.S1_at--261--5191Chr08:2423599..2423623 (25 bp)
GCAATCCAGATTTAGAGACCTCGTC
NONE
Target Sequence 
AAAGGAACTCATCATCAGATATGTGTATGGTTGTTGGGAGATAAAAGATATGAAGAGGTAAAGTGTGATTTTAGAGCAAC
ACAAAGTACACCAAGGCCAAAAGCAGAGTTGAGAATATTACGAGATGTAGTAGAGGTTTATACTCCAGCAGTATATAAGA
TTTTTGAGGAAGAAGTAATGCAGACTTTAAATTGTGATATATTCTACTGTGGTGATGTTGATGAACAAAAGGTGTATAAA
ATAAAGTCTCATGGTAAGCATCATGAACATGTTGTTAAATTCTCACCATTGGAATCTAGTGTCAAATGCAGCTGCAAGAA
GTTTGAATTTGCTGGTATCCTGTGCTCTCATGCCCTGAAAGTACTTGACATCAATAACATCAAATCAGTTCCTCAAATAA
GACATAGAGAAATGCTTGAAAATCAGATGCAATCCAGATTTAGAGACCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis