Browse Element(s) Details


OsAffx.16879.1.S1_at

Description tigr:9636.m00700
TID=OsAffx.16879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g075909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified
LOC_Os08g07570OsAffx.32166.1548.S1_s_at11/118+4248177..4249987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07580OsAffx.29083.1.S1_at11/118+4251270..4252139hypothetical protein
LOC_Os08g07590OsAffx.16879.1.S1_at9/118+4257539..4258633hypothetical protein
LOC_Os08g07600Os.12318.1.S1_at11/118+4261939..4262602expressed protein
LOC_Os08g07610Os.41248.4.S1_x_at2/118+4263872..4268637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g07620OsAffx.5738.1.S1_at11/118+4272015..4272344hypothetical protein
LOC_Os08g07630OsAffx.29084.2.S1_x_at11/118+4277482..4277988expressed protein
LOC_Os08g07640NANA8+4280063..4280476hypothetical protein
LOC_Os08g07650OsAffx.29085.1.S1_at11/118+4282901..4283271hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16879.1.S1_at--969--9891Chr08:4257660..4257684 (25 bp)
TACTTTGGTCTGCACCATTCCTCGG
LOC_Os08g07590
OsAffx.16879.1.S1_at--512--7811Chr08:4257666..4257690 (25 bp)
GGTCTGCACCATTCCTCGGCGGCAG
LOC_Os08g07590
OsAffx.16879.1.S1_at--377--10691Chr08:4257726..4257750 (25 bp)
TTGCCGTGGGCGGTGACAAGGCCGC
LOC_Os08g07590
OsAffx.16879.1.S1_at--1020--5891Chr08:4257800..4257824 (25 bp)
GAGCTCGCCTCCGAGGAGCACTACT
LOC_Os08g07590
OsAffx.16879.1.S1_at--55--9611Chr08:4257848..4257872 (25 bp)
TCATCCCGCGAGTACCACAGCGTTG
LOC_Os08g07590
OsAffx.16879.1.S1_at--965--4611Chr08:4257855..4258124 (25 bp)
GCGAGTACCACAGCGTTGCTCAAAC
LOC_Os08g07590
OsAffx.16879.1.S1_at--21--1191NONE
AGTACCACAGCGTTGCTCAAACGGT
NONE
OsAffx.16879.1.S1_at--995--2151NONE
ACAGCGTTGCTCAAACGGTGGCGGC
NONE
OsAffx.16879.1.S1_at--919--7531Chr08:4258560..4258584 (25 bp)
GTGGCGGCGCCAAAGCAAGTGTACT
LOC_Os08g07590
OsAffx.16879.1.S1_at--515--4691Chr08:4258563..4258587 (25 bp)
GCGGCGCCAAAGCAAGTGTACTACT
LOC_Os08g07590
OsAffx.16879.1.S1_at--1138--4531Chr08:4258566..4258590 (25 bp)
GCGCCAAAGCAAGTGTACTACTGGG
LOC_Os08g07590
Target Sequence 
TACTTTGGTCTGCACCATTCCTCGGCGGCAGCCGCCGCCTCAAGTCGTACAACGCGGCGGCTGGGGTTGCCGTGGGCGGT
GACAAGGCCGCCGCCGACCACCACCACCGCCACGCCGTCGGAGCTGATCTCGACGTCGGCGAGCTCGCCTCCGAGGAGCA
CTACTCCGCCGCCGGGACGTCGTCGTCGTCATCCCGCGAGTACCACAGCGTTGCTCAAACGGTGGCGGCGGCTGATGGCG
ACTTCGACGGCGGCGAGAAGATGGCAACAAGGCCGGCGGCGAGAGGTGGCGGCGCCAAAGCAAGTGTACTACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis