Browse Element(s) Details


OsAffx.16907.1.S1_at

Description tigr:9636.m00860
TID=OsAffx.16907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g090508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08990NANA8+5227520..5228375Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09000NANA8+5232728..5233582Germin-like protein subfamily 1 member 7 precursor, putative
LOC_Os08g09010Os.2211.1.S1_at11/118+5236153..5237313Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09020Os.23557.1.A1_at1/118+5242446..5243310Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g09030OsAffx.29111.1.S1_at11/118+5243646..5244227hypothetical protein
LOC_Os08g09040Os.23557.1.A1_at1/118+5247948..5248886Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09050OsAffx.16907.1.S1_at8/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_x_at3/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.26996.1.S1_at2/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.10528.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09050OsAffx.29111.1.S1_at1/118+5250093..5252825hypothetical protein
LOC_Os08g09060Os.2321.1.S1_at10/118+5253811..5254949Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09069NANA8+5256252..5256684NA
LOC_Os08g09080Os.2320.1.S1_at11/118+5257901..5259004Germin-like protein subfamily 1 member 11 precursor, putative, expressed
LOC_Os08g09090OsAffx.16908.1.S1_at10/118+5260531..5261145hypothetical protein
LOC_Os08g09100Os.11850.1.S1_at10/118+5261760..5266708RNA Binding Protein 45, putative, expressed
LOC_Os08g09110OsAffx.16909.1.S1_at11/118+5268520..5272950NB-ARC domain containing protein, expressed
LOC_Os08g09120OsAffx.29112.1.S1_at10/118+5273930..5274450hypothetical protein
LOC_Os08g09130OsAffx.29113.1.S1_at10/118+5277633..5279258hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16907.1.S1_at--662--9331Chr08:5250160..5250184 (25 bp)
TCGCTGGATCCCTCGGACCAGTGCA
LOC_Os08g09050
OsAffx.16907.1.S1_at--863--3951Chr08:5250173..5250197 (25 bp)
CGGACCAGTGCATCCTGCTCAACAG
LOC_Os08g09050
OsAffx.16907.1.S1_at--62--1791Chr08:5250081..5250100 (20 bp)
ACCCTCCCTGGCATGGCGGTAATTG
NONE
OsAffx.16907.1.S1_at--96--8271NONE
GGCATGGCGGTAATTGTTATCCAGT
NONE
OsAffx.16907.1.S1_at--5--591Chr08:5251588..5251612 (25 bp)
ATCCAGTAATTGCTGTGTATCCTAC
LOC_Os08g09050
OsAffx.16907.1.S1_at--25--7431NONE
GTGTATCCTACAGTACGTTTAAGTT
NONE
OsAffx.16907.1.S1_at--991--2791Chr08:5252730..5252753 (24 bp)
AAGTTTATTAGACCGCGGCAACCAT
LOC_Os08g09050
OsAffx.16907.1.S1_at--646--151Chr08:5252735..5252759 (25 bp)
ATTAGACCGCGGCAACCATCCAGGA
LOC_Os08g09050
OsAffx.16907.1.S1_at--778--1731Chr08:5252749..5252773 (25 bp)
ACCATCCAGGACAAGTGGCAAACTT
LOC_Os08g09050
OsAffx.16907.1.S1_at--298--5611Chr08:5252758..5252782 (25 bp)
GACAAGTGGCAAACTTAGCCTGGAA
LOC_Os08g09050
OsAffx.16907.1.S1_at--1096--3651Chr08:5252771..5252795 (25 bp)
CTTAGCCTGGAAAGAAGCTGGTCTA
LOC_Os08g09050
Target Sequence 
TCGCTGGATCCCTCGGACCAGTGCATCCTGCTCAACAGCGACACCCTCCCTGGCATGGCGGTAATTGTTATCCAGTAATT
GCTGTGTATCCTACAGTACGTTTAAGTTTATTAGACCGCGGCAACCATCCAGGACAAGTGGCAAACTTAGCCTGGAAAGA
AGCTGGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis