Browse Element(s) Details


OsAffx.17278.1.S1_at

Description tigr:9636.m03171
TID=OsAffx.17278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3174011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31680Os.24718.1.S1_at1/118+19503134..19508739retrotransposon protein, putative, unclassified
LOC_Os08g31690OsAffx.17274.1.S1_at11/118+19511367..19512629F-box domain containing protein, expressed
LOC_Os08g31700OsAffx.17275.1.S1_x_at10/118+19513610..19515281expressed protein
LOC_Os08g31700OsAffx.17275.1.S1_at10/118+19513610..19515281expressed protein
LOC_Os08g31710Os.11090.1.S1_at11/118+19515662..19517229transporter, putative, expressed
LOC_Os08g31720OsAffx.17276.1.S1_at11/118+19522513..19523186Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g31730OsAffx.29486.2.S1_x_at1/118+19529677..19530255hypothetical protein
LOC_Os08g31740OsAffx.17278.1.S1_at11/118+19532669..19537354hypothetical protein
LOC_Os08g31740Os.2254.1.S1_at1/118+19532669..19537354hypothetical protein
LOC_Os08g31750Os.49705.1.S1_at11/118+19539916..19543786methyltransferase, putative, expressed
LOC_Os08g31760OsAffx.6001.1.S1_x_at11/118+19550294..19552417expressed protein
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17278.1.S1_at--99--4371Chr08:19533794..19533818 (25 bp)
CCACAAGACCGGCTGCATGAACATG
LOC_Os08g31740
OsAffx.17278.1.S1_at--616--4991Chr08:19533780..19533804 (25 bp)
GCATGAACATGCTCTGCCCAGGCTT
LOC_Os08g31740
OsAffx.17278.1.S1_at--911--8891Chr08:19533747..19533771 (25 bp)
TGAGCAGAACTACCTCTCCTGGGAT
LOC_Os08g31740
OsAffx.17278.1.S1_at--696--3771Chr08:19533734..19533758 (25 bp)
CTCTCCTGGGATGGTACTTACAACA
LOC_Os08g31740
OsAffx.17278.1.S1_at--462--10211Chr08:19533704..19533728 (25 bp)
TATTCCTCTGAATATGACCAAGGTG
LOC_Os08g31740
OsAffx.17278.1.S1_at--851--5851Chr08:19533689..19533713 (25 bp)
GACCAAGGTGATCAATGCTGTTCAT
LOC_Os08g31740
OsAffx.17278.1.S1_at--128--631Chr08:19533675..19533699 (25 bp)
ATGCTGTTCATCACATTGCACTGAA
LOC_Os08g31740
OsAffx.17278.1.S1_at--430--10111Chr08:19532999..19533023 (25 bp)
TATCCAAACCGGGAACTGGCAGGTG
LOC_Os08g31740
OsAffx.17278.1.S1_at--269--9431Chr08:19532958..19532982 (25 bp)
TCGTGGGCTACTTCCCCAAGGAGAT
LOC_Os08g31740
OsAffx.17278.1.S1_at--263--771Chr08:19532748..19532772 (25 bp)
ATGTCGCCGACATCAACATCTACGA
LOC_Os08g31740
OsAffx.17278.1.S1_at--132--1931Chr08:19532719..19532743 (25 bp)
ACGGTCACCTCGAGCTCGGGAACAG
LOC_Os08g31740
Target Sequence 
CCACAAGACCGGCTGCATGAACATGCTCTGCCCAGGCTTTGTGCTGCTGAGCAGAACTACCTCTCCTGGGATGGTACTTA
CAACAGGATCTATTCCTCTGAATATGACCAAGGTGATCAATGCTGTTCATCACATTGCACTGAACCTTTTTAATGTTAAG
AAAGGGGCCTGTTCAGTTTGTTGCCAAAATCAACCTTACCATTTGTTGGTAAAGCCAAATTTTAGCAATGCCAACATTTT
GGATATCCAAACCGGGAACTGGCAGGTGGTGGTCGGTGACGAGGTCGTGGGCTACTTCCCCAAGGAGATCATCAACGGGA
TGAGCGGCGGGACGGAGGTGCAGATGGGAGGGATCGTGTACGCGTCGCCGGGGCAGAAGAGCCCACCCATGGGCAACGGC
ATCCAGCCCGTGCACGGCGGCAACTACCGCGCCGCCAGGTTCACGTGGGTGGCGGCCCAAGGCGCCAGGATCGCCAACTG
GACGGTGGCGAGAGATGTCGCCGACATCAACATCTACGACGCCACGGTCACCTCGAGCTCGGGAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis