Browse Element(s) Details


OsAffx.17307.2.S1_x_at

Description tigr:9634.m00692
TID=OsAffx.17307.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0759011/11Leucine Rich Repeat family protein
LOC_Os08g330901/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07540Os.9960.1.S1_at11/116+3631671..3638604expressed protein
LOC_Os06g07550Os.52679.1.S1_at11/116+3639787..3642652pentatricopeptide, putative, expressed
LOC_Os06g07560Os.21847.1.S1_at11/116+3648518..3649687EF hand family protein, expressed
LOC_Os06g07570OsAffx.8513.1.S1_s_at1/116+3654070..3654535transposon protein, putative, unclassified
LOC_Os06g07580NANA6+3655503..365609840S ribosomal protein S30, putative, expressed
LOC_Os06g07590OsAffx.17307.2.S1_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.17307.2.S1_x_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.27611.1.S1_at1/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07600Os.27290.1.A1_at11/116+3674581..3677842alkaline alpha galactosidase 2, putative, expressed
LOC_Os06g07620OsAffx.30150.7.S1_x_at11/116+3681378..3687678expressed protein
LOC_Os06g07620Os.27612.1.S1_at1/116+3681378..3687678expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17307.2.S1_x_at--477--8711Chr06:3660072..3660096 (25 bp)
TGTCGCTCCGGACGAACGCGATATC
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--665--5811Chr06:3659848..3659872 (25 bp)
GACCGCAACGGCTTCAATGGCACGC
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--1050--8851Chr06:3659811..3659835 (25 bp)
TGATGCTGCCGAAGCTCGCGCAGTT
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--142--9111Chr06:3659808..3659832 (25 bp)
TGCTGCCGAAGCTCGCGCAGTTCAA
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--96--2592Chr08:20435919..20435943 (25 bp)
AACGTGTCGTACAATGGCCAGCTCG
LOC_Os08g33090
OsAffx.17307.2.S1_x_at--256--5051Chr06:3659646..3659670 (25 bp)
GCAGCAAGGGCGTACGTGAGGAAGA
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--890--651Chr06:3659087..3659111 (25 bp)
ATGCAATTGCAGGATGAGGCCTGAA
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--1057--871Chr06:3659071..3659095 (25 bp)
AGGCCTGAAGAGACGCAGAGTTGCA
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--1030--5971Chr06:3659062..3659086 (25 bp)
GAGACGCAGAGTTGCAGAGCCAAGT
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--1144--4111Chr06:3659058..3659082 (25 bp)
CGCAGAGTTGCAGAGCCAAGTTTCA
LOC_Os06g07590
OsAffx.17307.2.S1_x_at--136--3431Chr06:3659048..3659072 (25 bp)
CAGAGCCAAGTTTCAGAATCGCCTT
LOC_Os06g07590
Target Sequence 
TGTCGCTCCGGACGAACGCGATATCCGGCGGGGTCCCCGCGGACATCGGCGGCTGCGTCCAGCTCCGGTCGCTGAACCTC
TCCGGGAACCGGCTCGCCGGCAGGTTGCCGGAGGGGCTCTTCTCGCTGGCGCTGCTCGAGAAGGTGGACCTCTCCGGGAA
CCGCCTCAACGGCGGCGTCTCGCCGGAGTTCAGCCGGCTCGCGAGCCTGACCACGCTGAACCTCGACCGCAACGGCTTCA
ATGGCACGCTCCCCGGTAACCTGATGCTGCCGAAGCTCGCGCAGTTCAACGTGTCGTACAATGGCCAGCTCGGTGGCGCC
GTGCCGGCGTCGCTCACCGGGATGCCGGCGAGCGCCTTCCTCGGCACGGCGCTCTGCGGCGGCCCGCTCGCCCCGTGCGC
CAACCCCTCGCCGCCGTCGCCCGGGGGCAGCAAGGGCGTACGTGAGGAAGAAGAGGATAGGAGAGAGAGATGCCATGAAA
AATGCAATTGCAGGATGAGGCCTGAAGAGACGCAGAGTTGCAGAGCCAAGTTTCAGAATCGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17307.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis