Browse Element(s) Details


OsAffx.17312.1.S1_x_at

Description tigr:9636.m03348
TID=OsAffx.17312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3341010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein
LOC_Os08g33440Os.18500.1.S1_at11/118+20725886..20729415dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os08g33450Os.14919.1.S1_at4/118+20733956..20739429hypothetical protein
LOC_Os08g33450OsAffx.29313.1.S1_at1/118+20733956..20739429hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17312.1.S1_x_at--446--10617Chr11:20904336..20904355 (20 bp)
TTCGGCTGTGGAGATCTAACACGAC
NONE
OsAffx.17312.1.S1_x_at--339--8532Chr10:10807092..10807114 (23 bp)
TGGAGATCTAACACGACCGGAATAC
NONE
OsAffx.17312.1.S1_x_at--878--8033Chr12:16513143..16513162 (20 bp)
GGAGATCTAACACGACCGGAATACA
NONE
OsAffx.17312.1.S1_x_at--231--6032Chr12:16512797..16513161 (25 bp)
GAGATCTAACACGACCGGAATACAT
NONE
OsAffx.17312.1.S1_x_at--602--1271Chr08:20709867..20710259 (25 bp)
AGATCTAACACGACCGGAATACATC
LOC_Os08g33410
OsAffx.17312.1.S1_x_at--42--6431Chr08:20709866..20710258 (25 bp)
GATCTAACACGACCGGAATACATCC
LOC_Os08g33410
OsAffx.17312.1.S1_x_at--694--9811NONE
TAACACGACCGGAATACATCCGGCA
NONE
OsAffx.17312.1.S1_x_at--516--2451Chr08:20709861..20710253 (25 bp)
AACACGACCGGAATACATCCGGCAT
LOC_Os08g33410
OsAffx.17312.1.S1_x_at--520--2171Chr08:20709860..20710252 (25 bp)
ACACGACCGGAATACATCCGGCATG
LOC_Os08g33410
OsAffx.17312.1.S1_x_at--555--3331Chr08:20709859..20710251 (25 bp)
CACGACCGGAATACATCCGGCATGT
LOC_Os08g33410
OsAffx.17312.1.S1_x_at--445--451Chr08:20709389..20709413 (25 bp)
ATCTCATAGCGCCGGCCTGTTGACA
LOC_Os08g33410
Target Sequence 
TTCGGCTGTGGAGATCTAACACGACCGGAATACATCCGGCATGTATCTTCACAGGAACAATTGAGCACTCGAGTAGGCTG
TGGTCAAGTACACCATATTATCGAGAACGATCTCGACAAATGCAGAATCGTCGCGCCCAACCCACCAACGAAGACCGACG
AACTATCTCATAGCGCCGGCCTGTTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17312.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis