Browse Element(s) Details


OsAffx.17350.1.S1_at

Description tigr:9636.m03597
TID=OsAffx.17350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3577011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed
LOC_Os08g35760Os.3380.1.S1_at11/118+22425165..22426202Auxin-binding protein ABP20 precursor, putative, expressed
LOC_Os08g35770OsAffx.17350.1.S1_at11/118+22431171..22431482hypothetical protein
LOC_Os08g35780NANA8+22437405..22438043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35790NANA8+22440125..22440625hypothetical protein
LOC_Os08g35800Os.28943.1.S1_x_at2/118+22444912..22448126retrotransposon protein, putative, unclassified
LOC_Os08g35810NANA8+22448748..22454950retrotransposon protein, putative, unclassified
LOC_Os08g35820Os.37083.2.S1_at1/118+22455582..22458946transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17350.1.S1_at--34--6151Chr08:22431202..22431226 (25 bp)
GAGGTCGGTCGATGGGTGGCCACAT
LOC_Os08g35770
OsAffx.17350.1.S1_at--985--2131Chr08:22431235..22431259 (25 bp)
ACAGACTCCCCACAGCGGCGTGCGA
LOC_Os08g35770
OsAffx.17350.1.S1_at--236--8371Chr08:22431251..22431275 (25 bp)
GGCGTGCGACGGTGAACTCCCCACG
LOC_Os08g35770
OsAffx.17350.1.S1_at--1140--7271Chr08:22431254..22431278 (25 bp)
GTGCGACGGTGAACTCCCCACGGTG
LOC_Os08g35770
OsAffx.17350.1.S1_at--885--4591Chr08:22431256..22431280 (25 bp)
GCGACGGTGAACTCCCCACGGTGGC
LOC_Os08g35770
OsAffx.17350.1.S1_at--852--4611Chr08:22431291..22431411 (25 bp)
GCGAGCGGCCGGTCTCTATGTTGTT
LOC_Os08g35770
OsAffx.17350.1.S1_at--418--5891Chr08:22431293..22431413 (25 bp)
GAGCGGCCGGTCTCTATGTTGTTTG
LOC_Os08g35770
OsAffx.17350.1.S1_at--58--3931Chr08:22431397..22431416 (20 bp)
CGGCCGGTCTCTATGTTGTTTGGAT
LOC_Os08g35770
OsAffx.17350.1.S1_at--301--4491Chr08:22431397..22431418 (22 bp)
GCCGGTCTCTATGTTGTTTGGATGA
LOC_Os08g35770
OsAffx.17350.1.S1_at--348--8772Chr08:22431408..22431432 (25 bp)
TGTTTGGATGATGAATGTGTTCTTG
LOC_Os08g35770
OsAffx.17350.1.S1_at--539--8791Chr08:22431425..22431449 (25 bp)
TGTTCTTGAGATGAGGGATGTTGTT
LOC_Os08g35770
Target Sequence 
GAGGTCGGTCGATGGGTGGCCACATCGAGGGGCACAGACTCCCCACAGCGGCGTGCGACGGTGAACTCCCCACGGTGGCG
CGGAGGGAGGCGAGCGGCCGGTCTCTATGTTGTTTGGATGATGAATGTGTTCTTGAGATGAGGGATGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis