Browse Element(s) Details


OsAffx.17354.1.S1_x_at

Description tigr:9636.m03617
TID=OsAffx.17354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3593911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35880OsAffx.6040.1.S1_at11/118+22501437..22505556F-box domain containing protein, expressed
LOC_Os08g35900Os.27498.1.S1_at11/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35900Os.19061.2.S1_at1/118+22507839..22513277F-box domain containing protein, expressed
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17354.1.S1_x_at--332--6551Chr08:22536355..22536379 (25 bp)
GATTATCAGATGTTGGCTTCCCAGA
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--1113--1251Chr08:22536313..22536337 (25 bp)
AGATATTGCTCGCTAGATCGCCATT
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--702--9831Chr08:22536286..22536310 (25 bp)
TAAAGAGCCTTTCACTCCTGATGTT
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--619--8871Chr08:22536268..22536292 (25 bp)
TGATGTTGCTGTTTCCTGCTAAAAA
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--681--6791Chr08:22536224..22536248 (25 bp)
GTTATTCAGGCTCCAAATCTCCAGA
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--41--1291Chr08:22536163..22536187 (25 bp)
AGATCGGTGATCTCACGTTCCTTGA
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--127--5831Chr08:22536104..22536128 (25 bp)
GACCGTGATTTCGTCAAGCTTATTA
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--8--2891Chr08:22536063..22536087 (25 bp)
AAGGGAGCTCGACTTTGCAATGCCG
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--803--10271Chr08:22535580..22536074 (25 bp)
TTTGCAATGCCGAGCACCCAGGAAA
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--1078--5511Chr08:22535538..22535562 (25 bp)
GAAAACACTCTATCCTTAGCTTTAT
LOC_Os08g35939
OsAffx.17354.1.S1_x_at--1080--4271Chr08:22535476..22535500 (25 bp)
CCTAGGAGCTAGGTGCCAGCCAAAA
LOC_Os08g35939
Target Sequence 
GATTATCAGATGTTGGCTTCCCAGATGGAGCAAAAGGATTGGAGATATTGCTCGCTAGATCGCCATTGCTAAAGAGCCTT
TCACTCCTGATGTTGCTGTTTCCTGCTAAAAACGGGGTGTATCACCAGTGGGTTATTCAGGCTCCAAATCTCCAGAACTT
TTTTATTACTGGACTGTATGACGATGGTTGGCAGATCGGTGATCTCACGTTCCTTGAGGAAGCAACAGTCGATTGGCCAT
TATACTCATATGACCGTGATTTCGTCAAGCTTATTACAGGGTTGTCTCAAGCAAGGGAGCTCGACTTTGCAATGCCGAGC
ACCCAGGAAACTGCAACAAGTAAAGCTGAAAACACTCTATCCTTAGCTTTATTATTCATTTCATTCAGAAGAAACAAATC
CTCAAAATTCCTAGGAGCTAGGTGCCAGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17354.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis