Browse Element(s) Details


OsAffx.17500.1.S1_at

Description tigr:9636.m04442
TID=OsAffx.17500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4362011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43560Os.10609.1.S1_at10/118+27422183..27426504L-ascorbate peroxidase 4, putative, expressed
LOC_Os08g43570Os.18310.1.S1_at11/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43570OsAffx.25575.1.S1_at1/118+27427787..27432339Glycosyl hydrolases family 35 protein, expressed
LOC_Os08g43580Os.8338.1.S1_at11/118+27432963..27435781Acyl carrier protein III, chloroplast precursor, putative, expressed
LOC_Os08g43590OsAffx.6125.1.S1_at11/118+27436992..27439141hypothetical protein
LOC_Os08g43600NANA8+27443333..27443857bZIP transcription factor family protein
LOC_Os08g43609NANA8+27446144..27446343NA
LOC_Os08g43620OsAffx.17500.1.S1_at11/118+27450208..27450715expressed protein
LOC_Os08g43630Os.20177.1.S1_at11/118+27453256..27453905expressed protein
LOC_Os08g43630OsAffx.29648.1.S1_x_at11/118+27453256..27453905expressed protein
LOC_Os08g43640Os.8718.1.S1_at11/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43640OsAffx.16671.1.S1_at1/118+27455543..2745921526S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os08g43654Os.52978.1.S1_at11/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.12779.1.S1_at9/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43654OsAffx.24650.2.S1_at1/118+27459992..27465855MATE efflux family protein, expressed
LOC_Os08g43670Os.6123.1.S1_at11/118+27469458..27471091Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17500.1.S1_at--54--4711Chr08:27450253..27450277 (25 bp)
GCGGCGGAGAGATCGTTCCATCGAT
LOC_Os08g43620
OsAffx.17500.1.S1_at--971--511Chr08:27450280..27450304 (25 bp)
ATCGATCAGCTCGCGGCTGGATCGA
LOC_Os08g43620
OsAffx.17500.1.S1_at--679--6391Chr08:27450299..27450323 (25 bp)
GATCGAGGCGAAGACGCATCAGATA
LOC_Os08g43620
OsAffx.17500.1.S1_at--799--4591Chr08:27450306..27450330 (25 bp)
GCGAAGACGCATCAGATATTGATCA
LOC_Os08g43620
OsAffx.17500.1.S1_at--533--5731Chr08:27450383..27450407 (25 bp)
GACGGCTTCTTCACGGAGGCCGATC
LOC_Os08g43620
OsAffx.17500.1.S1_at--242--3651Chr08:27450388..27450412 (25 bp)
CTTCTTCACGGAGGCCGATCTGGCG
LOC_Os08g43620
OsAffx.17500.1.S1_at--460--3791Chr08:27450425..27450449 (25 bp)
CTCGTGCAGCTCAGCGTCAGCGGCG
LOC_Os08g43620
OsAffx.17500.1.S1_at--363--4011Chr08:27450483..27450507 (25 bp)
CGTCCACCACGCTGCAGTCGGTGAA
LOC_Os08g43620
OsAffx.17500.1.S1_at--678--1111Chr08:27450498..27450522 (25 bp)
AGTCGGTGAACAACGCCGAGGCGTC
LOC_Os08g43620
OsAffx.17500.1.S1_at--577--7671Chr08:27450564..27450588 (25 bp)
GGGTCAGGAAGAGGTACCGCCACCT
LOC_Os08g43620
OsAffx.17500.1.S1_at--375--1331Chr08:27450573..27450597 (25 bp)
AGAGGTACCGCCACCTGTCGGAGCT
LOC_Os08g43620
Target Sequence 
GCGGCGGAGAGATCGTTCCATCGATCGATCGATCAGCTCGCGGCTGGATCGAGGCGAAGACGCATCAGATATTGATCAGA
TGGAGGTGGAGGAGATGAAGCCGGCCGGCGCCGGTGGGACGACGGTGGGCGACGGCTTCTTCACGGAGGCCGATCTGGCG
GCGGCGGACCAGCTCGTGCAGCTCAGCGTCAGCGGCGGCGGGTGCGAGGACGATGGCTACGACTCCTCCTCGTCCACCAC
GCTGCAGTCGGTGAACAACGCCGAGGCGTCGGCGGCGATGGACGACGACGACGACATGGGGCTGGATAGGAGGGTCAGGA
AGAGGTACCGCCACCTGTCGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis