Browse Element(s) Details


OsAffx.17542.1.S1_at

Description tigr:9637.m00118
TID=OsAffx.17542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0275010/11expressed protein
LOC_Os04g377803/11Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os11g297302/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02700Os.38226.1.S1_at11/119+1211953..1217009Polyadenylate-binding protein 2, putative, expressed
LOC_Os09g02710OsAffx.29695.1.S1_s_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710OsAffx.29695.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02710Os.11629.1.S1_at11/119+1220126..1223778CBS domain containing protein, expressed
LOC_Os09g02729Os.11389.1.S1_at11/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02729OsAffx.15516.1.S1_at1/119+1225555..1237527MAP3K-like protein kinase, putative, expressed
LOC_Os09g02750OsAffx.17542.1.S1_at10/119+1239588..1242978expressed protein
LOC_Os09g02750Os.6901.1.S1_at2/119+1239588..1242978expressed protein
LOC_Os09g02760OsAffx.19542.3.S1_x_at7/119+1247567..1251789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os09g02770Os.51029.1.S1_at11/119+1254785..1256020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17542.1.S1_at--1106--5357Chr08:15833990..15834013 (24 bp)
GAAGAGTGCCTCTATTGCTAGTGTT
NONE
OsAffx.17542.1.S1_at--1027--7594Chr04:22240782..22240805 (24 bp)
GGGCAGAATCTAACACTTTGGTATA
LOC_Os04g37780
OsAffx.17542.1.S1_at--586--9759Chr04:22240804..22240828 (25 bp)
TAATTTGTGTGCTTCCATTGCTCAT
LOC_Os04g37780
OsAffx.17542.1.S1_at--646--2951Chr09:1241865..1242204 (25 bp)
AATGGCCATTTTTCGGGTGTGGACA
LOC_Os09g02750
OsAffx.17542.1.S1_at--528--10831Chr09:1241797..1241821 (25 bp)
TTGGGCCCTGTGGTTATGTAGAAAT
LOC_Os09g02750
OsAffx.17542.1.S1_at--634--10171Chr09:1241189..1241224 (25 bp)
TATAAGCACATCGACAACGGCCTCG
LOC_Os09g02750
OsAffx.17542.1.S1_at--699--8211Chr09:1241156..1241180 (25 bp)
GGCAAGTTGTCTGTCGATTACCTCA
LOC_Os09g02750
OsAffx.17542.1.S1_at--313--9791Chr09:1241139..1241163 (25 bp)
TTACCTCACCGGTGGGTCCGAAATG
LOC_Os09g02750
OsAffx.17542.1.S1_at--757--2571NONE
AACGGTCTGTGCCTCAACTTGATTA
NONE
OsAffx.17542.1.S1_at--581--8231Chr09:1239666..1239944 (25 bp)
GGCAAAGGTTATTCTCAAGTCTCAA
LOC_Os09g02750
OsAffx.17542.1.S1_at--788--5452Chr02:14535026..14535050 (25 bp)
GAACGAGCTCCACTTGATGATCTTG
NONE
Target Sequence 
GAAGAGTGCCTCTATTGCTAGTGTTATGGGTTCTGTTCCGCTAAATGTTTCTTTTAGGAGAGCTTTAGTTGGGCAGAATC
TAACACTTTGGTATAATTTGTGTGCTTCCATTGCTCATATCCAGTTGGATGATTCTACTGATTGTTTTAGATGGAATTAT
CATCAAAATGGCCATTTTTCGGGTGTGGACAAGGACAAGAGAAAGTTGATACTTGTTGGTGCCTCTGCTTTATGTTGGGC
CCTGTGGTTATGTAGAAATGATAGGGTTTTTGACAAATCACCATCTGTTTCCTATATGCAGTTTTATCTTGAATTAAGAC
TTTATAAGCACATCGACAACGGCCTCGGCGTTGGTGGCAAGTTGTCTGTCGATTACCTCACCGGTGGGTCCGAAATGGTC
GACAAATGCGATAGCAATGGTGGAAACAACAACGGTCTGTGCCTCAACTTGATTAAGCCACAAAATTATGCACTTTGTAT
GGCAAAGGTTATTCTCAAGTCTCAACTACCAATGTCTCTACAGGAACGAGCTCCACTTGATGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis