Browse Element(s) Details


OsAffx.17556.1.S1_at

Description tigr:9637.m00213
TID=OsAffx.17556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TPR Domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0389011/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03870Os.9209.2.S1_at11/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.46314.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.54774.1.S1_x_at2/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.25367.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.52172.1.S1_x_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870OsAffx.28492.1.S1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03870Os.38751.1.A1_at1/119+1958631..1979370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03880OsAffx.17555.1.S1_at11/119+1981104..1982035hypothetical protein
LOC_Os09g03890OsAffx.17556.1.S1_at11/119+1985009..1988544TPR Domain containing protein
LOC_Os09g03900Os.46012.3.S1_x_at3/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.54691.1.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.46012.2.S1_x_at2/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03900Os.27088.1.A1_x_at1/119+1991384..1997508retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g03910NANA9+1999116..2000072hypothetical protein
LOC_Os09g03920NANA9+2001473..2003644retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03939OsAffx.29710.1.S1_x_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939Os.20772.1.S1_at11/119+2006493..2020289ABC-2 type transporter family protein, expressed
LOC_Os09g03939OsAffx.24773.1.S1_at1/119+2006493..2020289ABC-2 type transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17556.1.S1_at--817--5131Chr09:1987034..1987058 (25 bp)
GCAAAGCTTTCATGGCGTTACGCAG
LOC_Os09g03890
OsAffx.17556.1.S1_at--678--8371Chr09:1987047..1987071 (25 bp)
GGCGTTACGCAGATGCATGCAAGAT
LOC_Os09g03890
OsAffx.17556.1.S1_at--416--8171Chr09:1987079..1987103 (25 bp)
GGAACCGAAGTCCTTGAACTATTCA
LOC_Os09g03890
OsAffx.17556.1.S1_at--665--5471Chr09:1987094..1987118 (25 bp)
GAACTATTCAACCATGCTGAGGACA
LOC_Os09g03890
OsAffx.17556.1.S1_at--440--471Chr09:1987158..1987182 (25 bp)
ATCTGCGTGTAAAAGGACTATCTAA
LOC_Os09g03890
OsAffx.17556.1.S1_at--1092--8511Chr09:1987225..1987249 (25 bp)
TGGACATTTAAAGGAGTTCTCAGCA
LOC_Os09g03890
OsAffx.17556.1.S1_at--127--6051Chr09:1987279..1987303 (25 bp)
GAGATCACAGCTGAACATTTCATGG
LOC_Os09g03890
OsAffx.17556.1.S1_at--508--7851Chr09:1987304..1987328 (25 bp)
GGTACCATTCTCTATGAGCGTTCGG
LOC_Os09g03890
OsAffx.17556.1.S1_at--45--1011Chr09:1987320..1987344 (25 bp)
AGCGTTCGGTAGTGGAATTCAAGTT
LOC_Os09g03890
OsAffx.17556.1.S1_at--157--571Chr09:1987351..1987375 (25 bp)
ATCCAGCTGGGAGGAAAGTCTTACT
LOC_Os09g03890
OsAffx.17556.1.S1_at--211--5931Chr09:1987404..1987428 (25 bp)
GAGCATCTCTGCCTGACATCAGTGT
LOC_Os09g03890
Target Sequence 
GCAAAGCTTTCATGGCGTTACGCAGATGCATGCAAGATAGGAATGGGAACCGAAGTCCTTGAACTATTCAACCATGCTGA
GGACAATATGGAAAAGGGGATCGAAATGTGGGAAGGAATAGAATATCTGCGTGTAAAAGGACTATCTAAATCCAAAAAGG
AGAAAGTTTTACTGGATAAATTGGGTTTGAATGGACATTTAAAGGAGTTCTCAGCAGATGAAGCGTTTGAGCAAGCTTCA
AATATGAGATCACAGCTGAACATTTCATGGGGTACCATTCTCTATGAGCGTTCGGTAGTGGAATTCAAGTTAGGATTATC
CAGCTGGGAGGAAAGTCTTACTGAAGCAATCGAAAAATTTAAGACTGGGGGAGCATCTCTGCCTGACATCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis