Browse Element(s) Details


OsAffx.17567.1.S1_x_at

Description tigr:9637.m00309
TID=OsAffx.17567.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0460011/11hypothetical protein
LOC_Os01g036101/11retrotransposon protein, putative, unclassified
LOC_Os10g172701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04550Os.50454.1.S2_at2/119+2424674..2429409retrotransposon protein, putative, unclassified
LOC_Os09g04560NANA9+2433379..2433843hypothetical protein
LOC_Os09g04570Os.24831.1.S1_x_at10/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.3.S1_x_at9/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.53142.1.S1_at2/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.3.S1_s_at1/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04570Os.24831.4.S1_x_at1/119+2435804..2438580retrotransposon protein, putative, unclassified
LOC_Os09g04580OsAffx.25367.1.S1_at1/119+2439452..2443776retrotransposon, putative, centromere-specific
LOC_Os09g04590NANA9+2445629..2446267hypothetical protein
LOC_Os09g04600OsAffx.17567.1.S1_x_at11/119+2449046..2449436hypothetical protein
LOC_Os09g04600OsAffx.17567.1.S1_at11/119+2449046..2449436hypothetical protein
LOC_Os09g04610OsAffx.22946.1.S1_at1/119+2454233..2456153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04624OsAffx.17566.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.1.S1_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04624Os.51006.2.S1_x_at11/119+2457920..2473678GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17567.1.S1_x_at--326--7991Chr09:2449156..2449406 (25 bp)
GGACGACAACGGTTCGTTGTCTCCA
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--1132--5771Chr09:2449155..2449405 (25 bp)
GACGACAACGGTTCGTTGTCTCCAA
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--635--5591Chr09:2449152..2449402 (25 bp)
GACAACGGTTCGTTGTCTCCAAGTT
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--979--3251Chr09:2449150..2449170 (21 bp)
CAACGGTTCGTTGTCTCCAAGTTCT
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--1088--7895Chr10:11390834..11390853 (20 bp)
GGTTCGTTGTCTCCAAGTTCTACTT
NONE
OsAffx.17567.1.S1_x_at--353--1231Chr09:2449131..2449155 (25 bp)
AGTTCTACTTGGACACTGTCGCGAC
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--76--6731Chr09:2449130..2449154 (25 bp)
GTTCTACTTGGACACTGTCGCGACC
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--299--10571Chr09:2449129..2449153 (25 bp)
TTCTACTTGGACACTGTCGCGACCG
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--1001--9511Chr09:2449128..2449152 (25 bp)
TCTACTTGGACACTGTCGCGACCGA
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--17--3731Chr09:2449127..2449151 (25 bp)
CTACTTGGACACTGTCGCGACCGAG
LOC_Os09g04600
OsAffx.17567.1.S1_x_at--877--7239Chr02:14233701..14233802 (25 bp)
GTCGCGACCGAGAAAATTTGCCTTT
NONE
Target Sequence 
GGACGACAACGGTTCGTTGTCTCCAAGTTCTACTTGGACACTGTCGCGACCGAGAAAATTTGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17567.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis