Browse Element(s) Details


OsAffx.17577.1.S1_at

Description tigr:9637.m00406
TID=OsAffx.17577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0652011/11hypothetical protein
LOC_Os01g383401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06499Os.10281.2.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17576.1.S1_s_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.1.S1_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_x_at11/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.10281.2.S1_x_at10/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499OsAffx.17575.1.S1_at9/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06499Os.35889.1.S1_at1/119+3072960..3091870Sulfate transporter 4.1, chloroplast precursor, putative, expressed
LOC_Os09g06520OsAffx.17577.1.S1_at11/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.1.S1_x_at2/119+3095690..3099658hypothetical protein
LOC_Os09g06520OsAffx.27864.5.S1_x_at1/119+3095690..3099658hypothetical protein
LOC_Os09g06530OsAffx.29733.1.S1_at11/119+3103108..3104511hypothetical protein
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17577.1.S1_at--440--8151Chr09:3097838..3097862 (25 bp)
GGAAATATGGTCCTCCACAGATGAA
LOC_Os09g06520
OsAffx.17577.1.S1_at--605--7791Chr09:3097846..3098007 (25 bp)
GGTCCTCCACAGATGAAGGGTGAAA
LOC_Os09g06520
OsAffx.17577.1.S1_at--185--7351Chr09:3098002..3098026 (25 bp)
GTGAAACAGATTTATTAACTCCGGG
LOC_Os09g06520
OsAffx.17577.1.S1_at--511--10031Chr09:3098057..3098081 (25 bp)
TAGACTAGCATGTTTGTTGAGAGAA
LOC_Os09g06520
OsAffx.17577.1.S1_at--20--2251Chr09:3098086..3098110 (25 bp)
AAATTAAGTGGTATCGGCGAGCTAA
LOC_Os09g06520
OsAffx.17577.1.S1_at--1146--6891Chr09:3098096..3098120 (25 bp)
GTATCGGCGAGCTAAGACTAAAGAT
LOC_Os09g06520
OsAffx.17577.1.S1_at--534--7913Chr09:3098631..3098655 (25 bp)
GGTTGCCCAAAAAGTCATTAGTCCT
LOC_Os09g06520
OsAffx.17577.1.S1_at--482--6591Chr09:3098763..3098787 (25 bp)
GATTGACTGTGAGAAAGCTTATGAT
LOC_Os09g06520
OsAffx.17577.1.S1_at--40--7611Chr09:3099283..3099307 (25 bp)
GGGAATTTTTCCGTGAGATATCTTG
LOC_Os09g06520
OsAffx.17577.1.S1_at--877--6851Chr09:3099553..3099577 (25 bp)
GTATAGGCTTAACCCAAAGATCAAA
LOC_Os09g06520
OsAffx.17577.1.S1_at--191--7011Chr09:3099579..3099603 (25 bp)
GTACTCTTGGAGTTCATAATCTTAA
LOC_Os09g06520
Target Sequence 
GGAAATATGGTCCTCCACAGATGAAGGGTGAAACAGATTTATTAACTCCGGGGGAGATTGATATTAGATATGTTTGGAGA
AATAGACTAGCATGTTTGTTGAGAGAAGAAGAAATTAAGTGGTATCGGCGAGCTAAGACTAAAGATATTTTAGAAGTTGC
TATAAACATAATAATTGGGGTTGCCCAAAAAGTCATTAGTCCTACTCAAACTGCTTTTATTCCTGGAAGAAATATTATGG
AAAGAGTTGTTATTTTATATGAAATTATACATGAAATTCATCGCAAAAACAAGAGTGGGGTAATTCTTAAGATTGACTGT
GAGAAAGCTTATGATAAGCTTGGGAATTTTTCCGTGAGATATCTTGGTATTCCTATGCATTTTAGAATACTTAGTAACAA
GGATAGGAAAACAATCGAGGGAAGAATTGAAAAGAAACTTAGTAGTTGGAAAGGAGATGAGCACAAGAATAAGTATAGGC
TTAACCCAAAGATCAAAGGTACTCTTGGAGTTCATAATCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis