Browse Element(s) Details


OsAffx.17743.1.S1_at

Description tigr:9637.m01392
TID=OsAffx.17743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1656010/11hypothetical protein
LOC_Os01g327001/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein
LOC_Os09g16570NANA9+10170261..10171249hypothetical protein
LOC_Os09g16580OsAffx.7510.2.S1_at11/119+10173376..10176698hypothetical protein
LOC_Os09g16580Os.45173.1.S1_x_at2/119+10173376..10176698hypothetical protein
LOC_Os09g16590OsAffx.17744.1.S1_at11/119+10184189..10185583Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17743.1.S1_at--151--2871Chr09:10162836..10162860 (25 bp)
AAGTGTTGGTGCTAGATCTGGACTC
LOC_Os09g16560
OsAffx.17743.1.S1_at--332--491Chr09:10162821..10162845 (25 bp)
ATCTGGACTCGGGATCACTGTGAGA
LOC_Os09g16560
OsAffx.17743.1.S1_at--175--5531Chr09:10162343..10162808 (25 bp)
GAAAACGGAGCTTCGCTGACTACGC
LOC_Os09g16560
OsAffx.17743.1.S1_at--553--8411Chr09:10162309..10162333 (25 bp)
TGGCCGCAACTATTGTGGTAGCCGA
LOC_Os09g16560
OsAffx.17743.1.S1_at--153--3491Chr09:10162268..10162292 (25 bp)
CAGGAGATCATGCAGGACCCAAAGG
LOC_Os09g16560
OsAffx.17743.1.S1_at--456--3271Chr09:10162249..10162273 (25 bp)
CAAAGGACATGCTCTCCAAGGTCAA
LOC_Os09g16560
OsAffx.17743.1.S1_at--761--10611Chr09:10162207..10162231 (25 bp)
TTCGGGATCTGGAGGATGTCACCAC
LOC_Os09g16560
OsAffx.17743.1.S1_at--1001--7411Chr09:10162181..10162205 (25 bp)
GTGTTGCTCACCAGTGTTGTCTGCA
LOC_Os09g16560
OsAffx.17743.1.S1_at--1009--8811NONE
TGTTGTCTGCAACCATATCGGCCCA
NONE
OsAffx.17743.1.S1_at--298--9931Chr09:10161127..10161151 (25 bp)
TATCGGCCCAGTTTCTTTTACGGTG
LOC_Os09g16560
OsAffx.17743.1.S1_at--654--93714Chr10:5257733..5257756 (24 bp)
TCTTTTACGGTGTTTGCGAGGTACT
NONE
Target Sequence 
AAGTGTTGGTGCTAGATCTGGACTCGGGATCACTGTGAGAACCAAGGAAGAGGAAAACGGAGCTTCGCTGACTACGCCAC
CCCCCGTGGCCGCAACTATTGTGGTAGCCGAGGGGGACACCAGCAAGCAGGAGATCATGCAGGACCCAAAGGACATGCTC
TCCAAGGTCAACCCTATGGCAAAGGAGATTCGGGATCTGGAGGATGTCACCACCGTGTTGCTCACCAGTGTTGTCTGCAA
CCATATCGGCCCAGTTTCTTTTACGGTGTTTGCGAGGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis