Browse Element(s) Details


OsAffx.17787.1.S1_at

Description tigr:9637.m01693
TID=OsAffx.17787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1996011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19930Os.9782.1.S1_at11/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19930Os.23618.1.S1_at1/119+11919532..11925038HOTHEAD protein precursor, putative, expressed
LOC_Os09g19940Os.49315.1.S1_at11/119+11933598..11939112CwfJ-like family protein, putative, expressed
LOC_Os09g19950Os.53182.1.S1_at11/119+11941964..11943252expressed protein
LOC_Os09g19960OsAffx.17787.1.S1_at11/119+11949910..11951502hypothetical protein
LOC_Os09g19960Os.53028.1.S1_at1/119+11949910..11951502hypothetical protein
LOC_Os09g19970OsAffx.6337.1.S1_x_at11/119+11954986..11955875expressed protein
LOC_Os09g19980OsAffx.17788.1.S1_at11/119+11957383..11959727hypothetical protein
LOC_Os09g19990Os.40360.1.S1_at9/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40360.1.S1_x_at7/119+11965853..11969854hypothetical protein
LOC_Os09g19990Os.40855.5.S1_x_at3/119+11965853..11969854hypothetical protein
LOC_Os09g20000Os.18640.1.S1_at11/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.17261.1.S1_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os09g20000OsAffx.14103.1.S1_x_at1/119+11975354..11976837heavy-metal-associated domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17787.1.S1_at--413--8511Chr09:11951424..11951448 (25 bp)
TGGAAGCTCCTTCATGCCACGTCGG
LOC_Os09g19960
OsAffx.17787.1.S1_at--164--5811Chr09:11951364..11951388 (25 bp)
GACGCCTCTATGGAGAACTTGCCTA
LOC_Os09g19960
OsAffx.17787.1.S1_at--220--8991Chr09:11951323..11951347 (25 bp)
TGAACCATTTCTCGTCTTCCACGTT
LOC_Os09g19960
OsAffx.17787.1.S1_at--1114--9611Chr09:11951299..11951323 (25 bp)
TCATGTCTCAGCAGTTGAAACCAAG
LOC_Os09g19960
OsAffx.17787.1.S1_at--173--5571Chr09:11950796..11951295 (25 bp)
GAAAGCTTCCAAGTGCAGATCCGGC
LOC_Os09g19960
OsAffx.17787.1.S1_at--796--6391Chr09:11950552..11950576 (25 bp)
GATCGTTTGCCGAAGCACGCCGTCG
LOC_Os09g19960
OsAffx.17787.1.S1_at--801--91Chr09:11950525..11950549 (25 bp)
ATTCGCTCGGTGTCCACAATGTCGC
LOC_Os09g19960
OsAffx.17787.1.S1_at--500--3171Chr09:11950509..11950533 (25 bp)
CAATGTCGCCAAGCCGTTCCGGATG
LOC_Os09g19960
OsAffx.17787.1.S1_at--983--7971Chr09:11950489..11950513 (25 bp)
GGATGCCCTTGCTATTGTTCAGACT
LOC_Os09g19960
OsAffx.17787.1.S1_at--1101--10211Chr09:11950477..11950501 (25 bp)
TATTGTTCAGACTGCGACCAACCTT
LOC_Os09g19960
OsAffx.17787.1.S1_at--731--5851Chr09:11950465..11950486 (22 bp)
GACCAACCTTGTTGGACCTTGGAAG
LOC_Os09g19960
Target Sequence 
TGGAAGCTCCTTCATGCCACGTCGGCAAAGCTCCAGCCCGGCCTCCACTTCACCCCCACCGACGCCTCTATGGAGAACTT
GCCTACATCCCCTAAGCTCCCTGAACCATTTCTCGTCTTCCACGTTCATGTCTCAGCAGTTGAAACCAAGACAGAAAGCT
TCCAAGTGCAGATCCGGCTGAACCCTTGCGCCATCACCATCCTGAAAACCGCCCTCTACAACGCCCCTATCTTCCTTGGT
TGGGGATGCAGCGATGAGGAGATCGGGGTTTTCTTCTCCAACTCCGGCCACTGGCTTCCAACGTCGATCCCCCGCTCTCC
GATCGTTTGCCGAAGCACGCCGTCGCCATTCGCTCGGTGTCCACAATGTCGCCAAGCCGTTCCGGATGCCCTTGCTATTG
TTCAGACTGCGACCAACCTTGTTGGACCTTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis