Browse Element(s) Details


OsAffx.17830.2.S1_x_at

Description tigr:9631.m03035
TID=OsAffx.17830.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g211601/11hypothetical protein
LOC_Os05g183501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g010101/11retrotransposon protein, putative, unclassified
LOC_Os04g245701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21120OsAffx.30280.1.S1_x_at1/112+12543431..12544137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21130OsAffx.31069.1.S1_x_at1/112+12545016..12548077retrotransposon protein, putative, unclassified
LOC_Os02g21140NANA2+12548724..12550304transposon protein, putative, unclassified
LOC_Os02g21150NANA2+12552651..12554960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21160OsAffx.17830.2.S1_x_at1/112+12558782..12559030hypothetical protein
LOC_Os02g21170OsAffx.12142.1.S1_at11/112+12561046..12561513hypothetical protein
LOC_Os02g21180NANA2+12562844..12563373hypothetical protein
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17830.2.S1_x_at--472--16320Chr09:13074343..13074367 (25 bp)
AGCGGATTCGCCGGTCGAAGGCGGC
NONE
OsAffx.17830.2.S1_x_at--454--1134Chr12:14274398..14274422 (25 bp)
AGTCGTGGCCGGGAACGACGCAATT
NONE
OsAffx.17830.2.S1_x_at--753--7194Chr12:14274397..14274421 (25 bp)
GTCGTGGCCGGGAACGACGCAATTT
NONE
OsAffx.17830.2.S1_x_at--281--9434Chr12:14274396..14274420 (25 bp)
TCGTGGCCGGGAACGACGCAATTTC
NONE
OsAffx.17830.2.S1_x_at--306--7554Chr12:14274394..14274418 (25 bp)
GTGGCCGGGAACGACGCAATTTCGC
NONE
OsAffx.17830.2.S1_x_at--1002--8394Chr12:14274392..14274416 (25 bp)
GGCCGGGAACGACGCAATTTCGCCG
NONE
OsAffx.17830.2.S1_x_at--520--3814Chr12:14274391..14274415 (25 bp)
GCCGGGAACGACGCAATTTCGCCGG
NONE
OsAffx.17830.2.S1_x_at--835--8154Chr12:14274387..14274411 (25 bp)
GGAACGACGCAATTTCGCCGGAGTA
NONE
OsAffx.17830.2.S1_x_at--515--1857Chr08:7287190..7287210 (21 bp)
ACGACGCAATTTCGCCGGAGTAGTG
NONE
OsAffx.17830.2.S1_x_at--1148--1142Chr12:15022213..15022237 (25 bp)
ATTCAAATTTGAATCCCGGCCATCT
NONE
OsAffx.17830.2.S1_x_at--684--8432Chr12:14274307..14274331 (25 bp)
GGCCATCTCGCAGGCGCGGGGGTGA
NONE
Target Sequence 
AGCGGATTCGCCGGTCGAAGGCGGCGGCCATGGGGGTACTCACCGGCGCGCGAGGAGAAGCAAGCTCCGGCGGCGGGATT
GACCGGGGAAACGGCGGACGGGGTGGCGCACAAGCTTGCGAACCCGGCGGCGTCGACGGAGGGGGGGCGGCGAGTCGTGG
CCGGGAACGACGCAATTTCGCCGGAGTAGTGGAGGAGGTGGAGGAGGAGAGAGAGAGAGAGGCGGGATTCAAATTTGAAT
CCCGGCCATCTCGCAGGCGCGGGGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17830.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis