Browse Element(s) Details


OsAffx.17911.1.S1_at

Description tigr:9637.m02310
TID=OsAffx.17911.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY059166 At2g01080F23H14.5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2648011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein
LOC_Os09g26490OsAffx.6406.1.S1_at11/119+16008645..16009892esterase, putative
LOC_Os09g26500OsAffx.30039.1.S1_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26500OsAffx.30039.2.S1_s_at11/119+16011760..16014413serine hydrolase, putative
LOC_Os09g26510OsAffx.30040.1.S1_at7/119+16016089..16016752hypothetical protein
LOC_Os09g26520OsAffx.17912.1.S1_at11/119+16022741..16027615hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17911.1.S1_at--124--9291Chr09:16001397..16001421 (25 bp)
TCCGTGCAGATGGACAGGTCGTTCA
LOC_Os09g26480
OsAffx.17911.1.S1_at--769--1031Chr09:16001412..16001436 (25 bp)
AGGTCGTTCAGCCTGATCCAGTCGT
LOC_Os09g26480
OsAffx.17911.1.S1_at--405--2611Chr09:16001535..16001559 (25 bp)
AACGCCAACGGCATCGGGATCAGGT
LOC_Os09g26480
OsAffx.17911.1.S1_at--376--2831Chr09:16001730..16001754 (25 bp)
AAGTACTTGGAGATACGGATCGCCG
LOC_Os09g26480
OsAffx.17911.1.S1_at--485--611Chr09:16001764..16001788 (25 bp)
ATGCGCGCACGCACATCATGAACTT
LOC_Os09g26480
OsAffx.17911.1.S1_at--230--4811Chr09:16001790..16002100 (25 bp)
GCTCTGCCCAAGATTCAGTTTTCGA
LOC_Os09g26480
OsAffx.17911.1.S1_at--1030--2511Chr09:16002121..16002145 (25 bp)
AACTACACCGACATAGTGCACCGGG
LOC_Os09g26480
OsAffx.17911.1.S1_at--1098--1671Chr09:16002140..16002164 (25 bp)
ACCGGGAAGGGATCGAGTCTGTAAT
LOC_Os09g26480
OsAffx.17911.1.S1_at--780--7171Chr09:16002156..16002223 (25 bp)
GTCTGTAATTACACGCAAGGCTCTC
LOC_Os09g26480
OsAffx.17911.1.S1_at--1004--2931Chr09:16002251..16002274 (24 bp)
AAGGCTCTCCTCGTATCTGAACTGC
LOC_Os09g26480
OsAffx.17911.1.S1_at--753--2551Chr09:16002269..16002293 (25 bp)
AACTGCCTCACGTTTCACAGAAGTG
LOC_Os09g26480
Target Sequence 
TCCGTGCAGATGGACAGGTCGTTCAGCCTGATCCAGTCGTCGCTGTCGTCGTCGGCGTCGGCGAACGGCACCGGCGGCGG
CGGCGCGAACGCGAACGGGACGGCGTGCTCGGTGGCAACGCTGGTGTTCGCGGCGCAGAACGCCAACGGCATCGGGATCA
GGTACGGCGCGGCGGCGCTCGGCGTCGCGTACGCGAACGAGTCGGTCGGCGCCGTGGGCGTGCCGGAGTTCTACCAGCCG
CCGCGGAGCGCCAACGTGACGGTGCCCGTGCACGCCGTGTTCTCGCAGCCCGACGTGACCCGGCTCGTCGTCGGCGAGCT
CTCGGCGCAGCGCAAGTACTTGGAGATACGGATCGCCGGGAGCATCGATGCGCGCACGCACATCATGAACTTCGCTCTGC
CCAAGATTCAGTTTTCGATTGATTGCAGGATAGGAACTAACTACACCGACATAGTGCACCGGGAAGGGATCGAGTCTGTA
ATTACACGCAAGGCTCTCCTCGTATCTGAACTGCCTCACGTTTCACAGAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis