Browse Element(s) Details


OsAffx.17987.1.S1_at

Description tigr:9637.m02875
TID=OsAffx.17987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3356010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed
LOC_Os09g33560OsAffx.17987.1.S1_at10/119+19795059..19796364expressed protein
LOC_Os09g33570Os.6424.1.S1_at11/119+19798895..19802007expressed protein
LOC_Os09g33580Os.35707.1.S1_at10/119+19812148..19814715Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g33590OsAffx.6516.1.S1_at5/119+19817629..19821018retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17987.1.S1_at--665--4212Chr02:30097545..30098048 (25 bp)
CCGCCGCCGCAAAAGTCTTACATTG
NONE
OsAffx.17987.1.S1_at--920--8011Chr09:19795260..19795284 (25 bp)
GGAGGGACCACATGTAACCCATCAA
LOC_Os09g33560
OsAffx.17987.1.S1_at--654--2411Chr09:19795237..19795261 (25 bp)
AAAAATCTTGTGTTGGCTACGAGAA
LOC_Os09g33560
OsAffx.17987.1.S1_at--84--3311Chr09:19795208..19795232 (25 bp)
CACAATAAGGTGTCGGGTGGCTGCA
LOC_Os09g33560
OsAffx.17987.1.S1_at--1146--9051Chr09:19795187..19795211 (25 bp)
TGCATCGAGGGCAACAGCGACGTGC
LOC_Os09g33560
OsAffx.17987.1.S1_at--1104--1871Chr09:19795168..19795192 (25 bp)
ACGTGCGACGCGAGGCCAAGTCCTA
LOC_Os09g33560
OsAffx.17987.1.S1_at--366--4611Chr09:19795159..19795183 (25 bp)
GCGAGGCCAAGTCCTACGTTCACAT
LOC_Os09g33560
OsAffx.17987.1.S1_at--1033--1871Chr09:19795144..19795168 (25 bp)
ACGTTCACATCCGTAGCCGTTGCTT
LOC_Os09g33560
OsAffx.17987.1.S1_at--654--6651Chr09:19795126..19795150 (25 bp)
GTTGCTTCACCGAGAACGCCTTCTA
LOC_Os09g33560
OsAffx.17987.1.S1_at--225--1831Chr09:19795111..19795135 (25 bp)
ACGCCTTCTACTTGAGGAAGCGACA
LOC_Os09g33560
OsAffx.17987.1.S1_at--953--8171Chr09:19795096..19795120 (25 bp)
GGAAGCGACACTCCGCCAAGGAAAA
LOC_Os09g33560
Target Sequence 
CCGCCGCCGCAAAAGTCTTACATTGTGAAACGGAGGGACCACATGTAACCCATCAAAAATCTTGTGTTGGCTACGAGAAG
AAACACAATAAGGTGTCGGGTGGCTGCATCGAGGGCAACAGCGACGTGCGACGCGAGGCCAAGTCCTACGTTCACATCCG
TAGCCGTTGCTTCACCGAGAACGCCTTCTACTTGAGGAAGCGACACTCCGCCAAGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis