Browse Element(s) Details


OsAffx.18276.1.S1_at

Description tigr:9638.m01475
TID=OsAffx.18276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g178109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17830NANA10+8693742..8694443hypothetical protein
LOC_Os10g17840NANA10+8696460..8697957retrotransposon protein, putative, unclassified
LOC_Os10g17850OsAffx.22699.1.S1_x_at2/1110+8698669..8700249retrotransposon protein, putative, unclassified
LOC_Os10g17860Os.52731.1.S1_at1/1110+8700620..8701924retrotransposon protein, putative, unclassified
LOC_Os10g17870NANA10+8702326..8705512hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18276.1.S1_at--790--4651NONE
GCGGCCGAGGGTTTAGCTTTGCTTA
NONE
OsAffx.18276.1.S1_at--560--3911NONE
CGGCCGAGGGTTTAGCTTTGCTTAT
NONE
OsAffx.18276.1.S1_at--1156--8411Chr10:8677230..8677249 (20 bp)
GGCCGAGGGTTTAGCTTTGCTTATG
LOC_Os10g17810
OsAffx.18276.1.S1_at--851--4491Chr10:8677229..8677249 (21 bp)
GCCGAGGGTTTAGCTTTGCTTATGT
LOC_Os10g17810
OsAffx.18276.1.S1_at--5--4072Chr10:8677227..8677249 (23 bp)
CGAGGGTTTAGCTTTGCTTATGTGC
LOC_Os10g17810
OsAffx.18276.1.S1_at--1074--6132Chr10:8677226..8677249 (24 bp)
GAGGGTTTAGCTTTGCTTATGTGCT
LOC_Os10g17810
OsAffx.18276.1.S1_at--222--7694Chr10:8677224..8677248 (25 bp)
GGGTTTAGCTTTGCTTATGTGCTTC
LOC_Os10g17810
OsAffx.18276.1.S1_at--864--7874Chr10:8677223..8677247 (25 bp)
GGTTTAGCTTTGCTTATGTGCTTCG
LOC_Os10g17810
OsAffx.18276.1.S1_at--222--6834Chr10:8677222..8677246 (25 bp)
GTTTAGCTTTGCTTATGTGCTTCGC
LOC_Os10g17810
OsAffx.18276.1.S1_at--195--10351Chr10:8677221..8677245 (25 bp)
TTTAGCTTTGCTTATGTGCTTCGCA
LOC_Os10g17810
OsAffx.18276.1.S1_at--1046--10451Chr10:8677220..8677244 (25 bp)
TTAGCTTTGCTTATGTGCTTCGCAT
LOC_Os10g17810
Target Sequence 
GCGGCCGAGGGTTTAGCTTTGCTTATGTGCTTCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis