Browse Element(s) Details


OsAffx.18348.1.S1_at

Description tigr:9638.m01898
TID=OsAffx.18348.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g592301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59220Os.46012.2.S1_x_at8/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59220Os.46012.3.S1_x_at7/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59220Os.27088.1.A1_x_at4/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59220OsAffx.22442.1.S1_x_at2/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59220Os.54691.1.S1_x_at1/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59220Os.33534.1.S1_s_at1/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59220Os.55580.1.S1_at1/111+34534796..34542026retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.7.S1_s_at10/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.1.S1_s_at10/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.1.S1_at7/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230Os.57082.1.S1_at4/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.2.S1_x_at4/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.10110.2.S1_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.30648.1.S1_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.5.S1_x_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.29480.2.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.18348.1.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.31267.1.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59240NANA1+34571509..34571745hypothetical protein
LOC_Os01g59250OsAffx.17922.1.S1_x_at6/111+34573101..34576472expressed protein
LOC_Os01g59250Os.9100.1.S3_at2/111+34573101..34576472expressed protein
LOC_Os01g59260Os.10827.1.S1_x_at11/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59260Os.46055.2.S1_x_at5/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59270OsAffx.11657.1.S1_at11/111+34587556..34588247NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18348.1.S1_at--100--1851Chr10:11321030..11321054 (25 bp)
ACGCATCAGCAGGAGATTGTCAGCT
NONE
OsAffx.18348.1.S1_at--511--1531Chr10:11321037..11321061 (25 bp)
AGCAGGAGATTGTCAGCTGTGACGA
NONE
OsAffx.18348.1.S1_at--891--6051Chr10:11321042..11321066 (25 bp)
GAGATTGTCAGCTGTGACGATGAGA
NONE
OsAffx.18348.1.S1_at--502--8731Chr10:11321047..11321071 (25 bp)
TGTCAGCTGTGACGATGAGATCGAT
NONE
OsAffx.18348.1.S1_at--187--7555Chr10:11321159..11321183 (25 bp)
GTGGCCAAAGGCGACCGGAGAGATC
NONE
OsAffx.18348.1.S1_at--33--7131Chr10:11321195..11321219 (25 bp)
GTCATGGACGGCACGCCTGACGCAC
NONE
OsAffx.18348.1.S1_at--870--3351Chr10:11321206..11321230 (25 bp)
CACGCCTGACGCACGCGGTGGTCGT
NONE
OsAffx.18348.1.S1_at--906--7731Chr10:11321222..11321246 (25 bp)
GGTGGTCGTGGATCCGCAGCGGCAA
NONE
OsAffx.18348.1.S1_at--1149--4831Chr10:11321251..11321275 (25 bp)
GCTAGCGGCGAAAGGGCAAAACCGA
NONE
OsAffx.18348.1.S1_at--548--4591Chr10:11321258..11321282 (25 bp)
GCGAAAGGGCAAAACCGACGAGCGT
NONE
OsAffx.18348.1.S1_at--294--7552Chr10:11321281..11321305 (25 bp)
GTGGCGCAGCGCGGCAGACGTGCAG
NONE
Target Sequence 
ACGCATCAGCAGGAGATTGTCAGCTGTGACGATGAGATCGATGGCGACAACGAGGACGTCGCGGAGGCGATGACCTTGCT
CGCGATCAGACCGGCGATGGCGGAACGTGACCGGAAGACGGGGCCGGGCGTGGCCAAAGGCGACCGGAGAGATCGGAGGG
GTAGCGTCATGGACGGCACGCCTGACGCACGCGGTGGTCGTGGATCCGCAGCGGCAAGGAGGCTAGCGGCGAAAGGGCAA
AACCGACGAGCGTGGCGCAGCGCGGCAGACGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis