Browse Element(s) Details


OsAffx.11657.1.S1_at

Description tigr:9629.m05820
TID=OsAffx.11657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5927011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59230OsAffx.25936.7.S1_s_at10/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.1.S1_s_at10/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.1.S1_at7/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230Os.57082.1.S1_at4/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.2.S1_x_at4/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.10110.2.S1_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.30648.1.S1_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.25936.5.S1_x_at2/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.29480.2.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.18348.1.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59230OsAffx.31267.1.S1_at1/111+34558875..34569942retrotransposon protein, putative, unclassified
LOC_Os01g59240NANA1+34571509..34571745hypothetical protein
LOC_Os01g59250OsAffx.17922.1.S1_x_at6/111+34573101..34576472expressed protein
LOC_Os01g59250Os.9100.1.S3_at2/111+34573101..34576472expressed protein
LOC_Os01g59260Os.10827.1.S1_x_at11/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59260Os.46055.2.S1_x_at5/111+34577064..34580351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g59270OsAffx.11657.1.S1_at11/111+34587556..34588247NA
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59290OsAffx.23853.1.S1_at11/111+34601599..34602147hypothetical protein
LOC_Os01g59300OsAffx.11658.1.S1_at10/111+34604010..34607660hypothetical protein
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11657.1.S1_at--1045--10051Chr01:34587876..34587900 (25 bp)
TAGTGATAGGTTTTGGGAACTGCTC
LOC_Os01g59270
OsAffx.11657.1.S1_at--36--291Chr01:34587881..34587905 (25 bp)
ATAGGTTTTGGGAACTGCTCGGCTC
LOC_Os01g59270
OsAffx.11657.1.S1_at--577--1011Chr01:34587883..34587907 (25 bp)
AGGTTTTGGGAACTGCTCGGCTCAT
LOC_Os01g59270
OsAffx.11657.1.S1_at--821--6791Chr01:34587885..34587909 (25 bp)
GTTTTGGGAACTGCTCGGCTCATGC
LOC_Os01g59270
OsAffx.11657.1.S1_at--344--10831Chr01:34587888..34587912 (25 bp)
TTGGGAACTGCTCGGCTCATGCCAG
LOC_Os01g59270
OsAffx.11657.1.S1_at--997--8311Chr01:34587901..34587925 (25 bp)
GGCTCATGCCAGCAAGACTTTGTTT
LOC_Os01g59270
OsAffx.11657.1.S1_at--992--9611Chr01:34587904..34587928 (25 bp)
TCATGCCAGCAAGACTTTGTTTCGT
LOC_Os01g59270
OsAffx.11657.1.S1_at--1018--4391Chr01:34587908..34587932 (25 bp)
GCCAGCAAGACTTTGTTTCGTGATT
LOC_Os01g59270
OsAffx.11657.1.S1_at--1156--2751Chr01:34587914..34587938 (25 bp)
AAGACTTTGTTTCGTGATTTTGCAC
LOC_Os01g59270
OsAffx.11657.1.S1_at--142--6851Chr01:34587922..34587946 (25 bp)
GTTTCGTGATTTTGCACAATGGCCA
LOC_Os01g59270
OsAffx.11657.1.S1_at--1146--9411Chr01:34587925..34587949 (25 bp)
TCGTGATTTTGCACAATGGCCAGGG
LOC_Os01g59270
Target Sequence 
TAGTGATAGGTTTTGGGAACTGCTCGGCTCATGCCAGCAAGACTTTGTTTCGTGATTTTGCACAATGGCCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis