Browse Element(s) Details


OsAffx.18463.1.S1_at

Description tigr:9638.m02602
TID=OsAffx.18463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3032011/11La domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18463.1.S1_at--701--1931Chr10:15416953..15416977 (25 bp)
ACGGCGGGAGCGACGTTTCTACCAG
LOC_Os10g30320
OsAffx.18463.1.S1_at--328--1711Chr10:15416785..15416957 (25 bp)
ACCAGCGCGCGTTTACATTAAGAAT
LOC_Os10g30320
OsAffx.18463.1.S1_at--1064--6451Chr10:15416747..15416771 (25 bp)
GATCAATATTCCATCGGTGACTTCG
LOC_Os10g30320
OsAffx.18463.1.S1_at--95--7771Chr10:15416732..15416756 (25 bp)
GGTGACTTCGACTTGGAGTACCATA
LOC_Os10g30320
OsAffx.18463.1.S1_at--974--9871Chr10:15416694..15416718 (25 bp)
TACATTTGCACCCATTTATACCCTC
LOC_Os10g30320
OsAffx.18463.1.S1_at--1077--2491Chr10:15415419..15415443 (25 bp)
AACATAATGCCTCTCATACCGTTTT
LOC_Os10g30320
OsAffx.18463.1.S1_at--565--8191Chr10:15415369..15415393 (25 bp)
GGAAGCACCATTGACCGCAGAAGAG
LOC_Os10g30320
OsAffx.18463.1.S1_at--374--2451Chr10:15415206..15415230 (25 bp)
AACAATTTATGTTCCGACGTGTATT
LOC_Os10g30320
OsAffx.18463.1.S1_at--518--2191Chr10:15415162..15415186 (25 bp)
ACAAGGTTGGGTTCCGTTGACATTG
LOC_Os10g30320
OsAffx.18463.1.S1_at--705--5671Chr10:15415144..15415168 (25 bp)
GACATTGGTTGCTGGTTTCCCTAGA
LOC_Os10g30320
OsAffx.18463.1.S1_at--185--6091Chr10:15414856..15414878 (23 bp)
GAGTCCAGGCTCTAACTACCGATTA
LOC_Os10g30320
Target Sequence 
ACGGCGGGAGCGACGTTTCTACCAGCGCGCGTTTACATTAAGAATTAGATTAGGATTGGATCAATATTCCATCGGTGACT
TCGACTTGGAGTACCATACGGATTTCAACTTTACATTTGCACCCATTTATACCCTCATCCTCCACGATTTGCCTTTCCAC
TCCCACAACAAAAACATAATGCCTCTCATACCGTTTTCGGTGCCTCCACATATGGAGCAACCGGAAGCACCATTGACCGC
AGAAGAGCGTGAAAAGAAAATACGTGAACAAATTGAGTATTACTTTAGTGAAAACAATTTATGTTCCGACGTGTATTTGA
AGGGGTGGATGAACCAACAAGGTTGGGTTCCGTTGACATTGGTTGCTGGTTTCCCTAGAGTCCAGGCTCTAACTACCGAT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis