Browse Element(s) Details


OsAffx.18569.1.S1_at

Description tigr:9638.m03481
TID=OsAffx.18569.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative glutathione S-transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3869011/11glutathione S-transferase GSTU6, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38590Os.15699.1.S1_at8/1110+20262829..20263917glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590Os.40000.1.S1_x_at1/1110+20262829..20263917glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600Os.40000.1.S1_at11/1110+20265385..20266432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600Os.40000.1.S1_x_at11/1110+20265385..20266432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610Os.8868.1.S1_at11/1110+20267390..20268697glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610Os.40000.1.S1_x_at3/1110+20267390..20268697glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630Os.7732.1.S1_at10/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630OsAffx.5632.1.S1_x_at2/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630OsAffx.5632.1.S1_at2/1110+20270215..20272232glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38640NANA10+20274076..20274906glutathione S-transferase GSTU6, putative
LOC_Os10g38660NANA10+20277801..20278597glutathione S-transferase GSTU6, putative
LOC_Os10g38664NANA10+20279232..20279933expressed protein
LOC_Os10g38670Os.21842.1.S1_at11/1110+20280396..20281652glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680OsAffx.27523.1.S1_x_at11/1110+20282048..20283534hypothetical protein
LOC_Os10g38680OsAffx.27523.3.S1_x_at1/1110+20282048..20283534hypothetical protein
LOC_Os10g38690OsAffx.18569.1.S1_x_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.18569.1.S1_at11/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38690OsAffx.22609.1.S1_x_at1/1110+20287129..20287900glutathione S-transferase GSTU6, putative
LOC_Os10g38700Os.14444.1.S1_at11/1110+20289681..20290839glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18569.1.S1_at--848--6991Chr10:20287233..20287257 (25 bp)
GTACGTCGAGCAGGACATCAGGGAC
LOC_Os10g38690
OsAffx.18569.1.S1_at--306--5671Chr10:20287246..20287270 (25 bp)
GACATCAGGGACAAGAGCGAGCTCC
LOC_Os10g38690
OsAffx.18569.1.S1_at--145--9471Chr10:20287433..20287457 (25 bp)
TCTGGGCCACCTACATCGATGACGA
LOC_Os10g38690
OsAffx.18569.1.S1_at--222--8451Chr10:20287437..20287458 (22 bp)
GGCCACCTACATCGATGACGAGTTT
LOC_Os10g38690
OsAffx.18569.1.S1_at--362--8931Chr10:20287452..20287555 (25 bp)
TGACGAGTTTGCTACGAAGTTCCGA
LOC_Os10g38690
OsAffx.18569.1.S1_at--449--6071Chr10:20287536..20287559 (24 bp)
GAGTTTGCTACGAAGTTCCGAGCAA
LOC_Os10g38690
OsAffx.18569.1.S1_at--608--9831Chr10:20287543..20287567 (25 bp)
TACGAAGTTCCGAGCAATGGGAGAA
LOC_Os10g38690
OsAffx.18569.1.S1_at--567--1231Chr10:20287548..20287572 (25 bp)
AGTTCCGAGCAATGGGAGAAGCGAA
LOC_Os10g38690
OsAffx.18569.1.S1_at--1049--4151Chr10:20287612..20287636 (25 bp)
CGCCGCGCTGGAGACCTTGGAGGAA
LOC_Os10g38690
OsAffx.18569.1.S1_at--468--7891Chr10:20287794..20287818 (25 bp)
GGTTCTCCGCGCTGGAGGCCGCCAA
LOC_Os10g38690
OsAffx.18569.1.S1_at--607--4631Chr10:20287823..20287847 (25 bp)
GCGATACCCAGCGTCGAGCGGCTGC
LOC_Os10g38690
Target Sequence 
GTACGTCGAGCAGGACATCAGGGACAAGAGCGAGCTCCTCGTCGTCTCCAACCCGGTGCACAAGAAGGTGCCCGTGCTCA
TCCACGGCGGCAAGCCCGTCTGCGAGTCGCAGATCATCGTGCAGTACATCGACGAGGCGTTCCCCGGCGCCGGCGCCTCC
CTCCTCCCCTCCGATCCCCACGAACGCGCTGTCGCCCGCTTCTGGGCCACCTACATCGATGACGAGTTTGCTACGAAGTT
CCGAGCAATGGGAGAAGCGAAGGAGGAGGAGGAGAAGGACGAGGCGGCGGCGCAGGTGTTCGCCGCGCTGGAGACCTTGG
AGGAAGCCATGAAGGGGAAGGTCTTCTTCGGCGGCGACAGCGCGGGGTACGTGGACGTGGCGCTCGGTGGGTTCCTGGGG
TGGATCAAGGCGGCGGAGGCGTTGGCCGGCGTCGCGTTCCTCGACGGGGCCCGGACGCCGCTCCTGGCCGCTTGGGCGGC
GCGGTTCTCCGCGCTGGAGGCCGCCAAGGAGGCGATACCCAGCGTCGAGCGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis