Browse Element(s) Details


OsAffx.18604.1.S1_x_at

Description tigr:9638.m03840
TID=OsAffx.18604.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g420309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein
LOC_Os10g42040Os.46574.1.S1_at11/1110+22277946..22279009expressed protein
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18604.1.S1_x_at--95--3431Chr10:22269513..22269537 (25 bp)
CAGAGCGTGATGATGCGGCTGGAGC
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--662--8871Chr10:22269629..22269653 (25 bp)
TGATGTCTCGATGCAGCACGCACCG
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--488--7171Chr10:22269633..22269657 (25 bp)
GTCTCGATGCAGCACGCACCGTTCA
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--277--9231Chr10:22269712..22269736 (25 bp)
TCCATGAAGTGCAGCCCCGGTGTGG
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--76--2011NONE
ACTCGAAGACGAGGTGCTCCTGATG
NONE
OsAffx.18604.1.S1_x_at--374--6152Chr10:22274821..22274844 (24 bp)
GAGGTGCTCCTGATGATCCTCGCCC
NONE
OsAffx.18604.1.S1_x_at--957--1911NONE
ACTGTCCCCGTAGACGGAGCAGGGA
NONE
OsAffx.18604.1.S1_x_at--9--5391Chr10:22271513..22271537 (25 bp)
GAAGCAGGAGGTCACTGGATCCAAA
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--593--8551Chr10:22271528..22271552 (25 bp)
TGGATCCAAACTACAGGCCATCGGT
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--801--9871Chr10:22271539..22271563 (25 bp)
TACAGGCCATCGGTTCCTCCTGGAA
LOC_Os10g42030
OsAffx.18604.1.S1_x_at--368--7911Chr10:22271550..22271574 (25 bp)
GGTTCCTCCTGGAAGGCCTTACACG
LOC_Os10g42030
Target Sequence 
CAGAGCGTGATGATGCGGCTGGAGCGGCTGCGGCCTGGCGGCGTGAAGAAGGTGGCGAGGCCGAAGTCGGCGATCTTGAG
CACGCCCGTCGCCGTCGATGAGCAGGTTGGCGCCCTTGATGTCTCGATGCAGCACGCACCGTTCATGGCAGCTGCGGAGC
TCGACGAGGATATGCGCCATGAAGCACTTGACCTGCGGCTCCATGAAGTGCAGCCCCGGTGTGGCGGCGAGGTCATGGTC
CATGTACTCGAAGACGAGGTGCTCCTGATGATCCTCGCCCTCATCTGCACCCTGCACACTGTCCCCGTAGACGGAGCAGG
GAGAGACAGAAGCAGGAGGTCACTGGATCCAAACTACAGGCCATCGGTTCCTCCTGGAAGGCCTTACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18604.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis