Browse Element(s) Details


OsAffx.18669.1.S1_at

Description tigr:9639.m00381
TID=OsAffx.18669.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ring finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0469011/11Zinc finger, C3HC4 type family protein
LOC_Os12g0446011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04630OsAffx.30818.1.S1_at11/1111+1969409..1970622hypothetical protein
LOC_Os11g04640OsAffx.19542.3.S1_x_at3/1111+1973199..1977421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g04650NANA11+1980525..1981824hypothetical protein
LOC_Os11g04660Os.5263.1.S1_at11/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.1.S1_x_at10/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04660Os.5263.2.S1_x_at6/1111+1982386..1984083Strictosidine synthase family protein
LOC_Os11g04670Os.11248.1.S1_at10/1111+1985059..19909422-isopropylmalate synthase B, putative, expressed
LOC_Os11g04680OsAffx.19490.1.S1_at11/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04680OsAffx.19490.2.S1_at1/1111+1991285..1993060Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g04690OsAffx.18669.1.S1_at11/1111+1994648..1995343Zinc finger, C3HC4 type family protein
LOC_Os11g04700OsAffx.31577.1.S1_s_at11/1111+1997078..2000551expressed protein
LOC_Os11g04700OsAffx.31577.2.S1_at1/1111+1997078..2000551expressed protein
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18669.1.S1_at--780--7592Chr12:1899002..1899026 (25 bp)
GGGCAGAGCAAGGATTCAACATTTG
LOC_Os12g04460
OsAffx.18669.1.S1_at--544--2072Chr12:1899020..1899044 (25 bp)
ACATTTGGAGTTGGATTCGTGCTTC
LOC_Os12g04460
OsAffx.18669.1.S1_at--384--1252Chr12:1899028..1899052 (25 bp)
AGTTGGATTCGTGCTTCCAGGACGT
LOC_Os12g04460
OsAffx.18669.1.S1_at--324--2552Chr12:1899145..1899169 (25 bp)
AACTCCGACCGTAGCGGCGGACTCG
LOC_Os12g04460
OsAffx.18669.1.S1_at--801--8292Chr12:1899187..1899211 (25 bp)
GGCTTCAGCATCGTGGACCTACTGG
LOC_Os12g04460
OsAffx.18669.1.S1_at--1143--8072Chr12:1899201..1899225 (25 bp)
GGACCTACTGGACGGTATCCTACAA
LOC_Os12g04460
OsAffx.18669.1.S1_at--979--4253Chr12:1899289..1899313 (25 bp)
CCGGAGATTACCGTCGGCGACGAGA
LOC_Os12g04460
OsAffx.18669.1.S1_at--1079--4192Chr12:1899333..1899357 (25 bp)
CCCGGTGTGCCTTCAGGGCTTCGAG
LOC_Os12g04460
OsAffx.18669.1.S1_at--104--9192Chr12:1899380..1899404 (25 bp)
TGCCGTGCGCTGATTCGCACTGCTT
LOC_Os12g04460
OsAffx.18669.1.S1_at--415--8832Chr12:1899390..1899414 (25 bp)
TGATTCGCACTGCTTCCATGAGCAG
LOC_Os12g04460
OsAffx.18669.1.S1_at--778--692Chr12:1899407..1899431 (25 bp)
ATGAGCAGTGCATATTCAGCTGGCT
LOC_Os12g04460
Target Sequence 
GGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGNTCCACGCCGGGGCCAACCAGG
CGGACGGCGGCGTCATGGCNGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGG
CGGACTCGACGANCANGCCACCNGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAANCGGANGACGACGGCA
ATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTNANCCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAG
GCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTNAGGANGATGCCGTGCGCTGATTCGCACTG
CTTCCATGAGCAGTGCATATTCAGCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis