Browse Element(s) Details


OsAffx.18673.1.S1_at

Description tigr:9634.m00988
TID=OsAffx.18673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g524201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein
LOC_Os03g52340Os.27846.1.S1_at11/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52340Os.33341.2.S1_at1/113+30012896..30016715Endoplasmic oxidoreductin 1 precursor, putative, expressed
LOC_Os03g52350OsAffx.13467.1.S1_at9/113+30017256..30021314hypothetical protein
LOC_Os03g52350OsAffx.26881.2.S1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52350Os.27056.1.A1_at1/113+30017256..30021314hypothetical protein
LOC_Os03g52360Os.36176.1.S1_at2/113+30022141..30022484hypothetical protein
LOC_Os03g52370Os.16532.1.S1_at11/113+30025486..30026267expressed protein
LOC_Os03g52370Os.47327.1.S1_x_at1/113+30025486..30026267expressed protein
LOC_Os03g52380Os.47327.1.S1_x_at11/113+30026938..30027604expressed protein
LOC_Os03g52380Os.47327.1.S1_at11/113+30026938..30027604expressed protein
LOC_Os03g52390Os.6620.1.S1_at9/113+30028888..30029459type II proteinase inhibitor family protein, expressed
LOC_Os03g52400Os.27925.1.S1_at10/113+30031131..30031995Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os03g52410Os.55394.1.S1_at11/113+30032893..30033513expressed protein
LOC_Os03g52410OsAffx.18426.1.S1_x_at1/113+30032893..30033513expressed protein
LOC_Os03g52420OsAffx.18673.1.S1_at1/113+30034519..30035254hypothetical protein
LOC_Os03g52430Os.20684.1.S1_at11/113+30036022..30040667Mitochondrial carrier protein, expressed
LOC_Os03g52450Os.5151.1.S1_at11/113+30044853..30049640CCT motif family protein, expressed
LOC_Os03g52460Os.20397.1.S1_a_at10/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52460Os.22699.1.S1_at1/113+30049980..30055132Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
LOC_Os03g52470Os.5965.1.S1_s_at11/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed
LOC_Os03g52470OsAffx.25367.1.S1_at1/113+30057048..30065387retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18673.1.S1_at--426--7672Chr03:30034806..30034949 (25 bp)
GGGTTCTCCTTCAGCTAGATTTGGC
LOC_Os03g52420
OsAffx.18673.1.S1_at--537--8811Chr06:5182405..5182429 (25 bp)
TGTTGCCTGATGTTATTGGGACTAC
NONE
OsAffx.18673.1.S1_at--86--10851Chr06:5182390..5182414 (25 bp)
TTGGGACTACATGCAGCCAGTGGCT
NONE
OsAffx.18673.1.S1_at--97--4671Chr06:5182247..5182271 (25 bp)
GCAGGCCAAATATACCATTTTTCGT
NONE
OsAffx.18673.1.S1_at--917--171Chr06:5182231..5182255 (25 bp)
ATTTTTCGTGCCAATTAACTGCTGA
NONE
OsAffx.18673.1.S1_at--962--6431Chr06:5182208..5182232 (25 bp)
GATCATGCCATGACACACAGACTTC
NONE
OsAffx.18673.1.S1_at--364--2091Chr06:5182183..5182207 (25 bp)
ACATCATGACCAGCACATTCCAAGA
NONE
OsAffx.18673.1.S1_at--659--7111Chr06:5181991..5182015 (25 bp)
GTCAGACTCGGACCATCGCATATTA
NONE
OsAffx.18673.1.S1_at--45--9351Chr06:5181976..5182000 (25 bp)
TCGCATATTACGCTGGAAGTTCACA
NONE
OsAffx.18673.1.S1_at--975--8491Chr06:5181895..5181919 (25 bp)
TGGCATCAACTTGCAAACCCATTGT
NONE
OsAffx.18673.1.S1_at--937--2371Chr06:5181881..5181905 (25 bp)
AAACCCATTGTAGGCTTCCATCGGA
NONE
Target Sequence 
GGGTTCTCCTTCAGCTAGATTTGGCGAGGAGACTGGCGGGTGGTGGATCGGAGGGGTCCTGGGCCAGCTCTCAGGGATGG
AGGTAACCAGGTTGTTGCCTGATGTTATTGGGACTACATGCAGCCAGTGGCTGGAGAAGGTTATTGGAACTGAGCACACT
GACATTCTTCGTGTTCCATTCAGAATTCATCTTTCTTTTTTTCTTTCTTTTTTTGCTGCAGGATGTTGCAAACGAAATTA
TGAGGGAAATGCAGGCCAAATATACCATTTTTCGTGCCAATTAACTGCTGATCATGCCATGACACACAGACTTCACATCA
TGACCAGCACATTCCAAGAAATTGCTAGAAGCAAGGACACTGTTCGGCAGTATGAATCACACATTGCATTCACCCTTCCT
GCTCTTGCAATAAGACAGTCAGACTCGGACCATCGCATATTACGCTGGAAGTTCACAAGAGAATGCAAACAATCCGATGA
AAATGGCTTTCATAAAGCATATCATATTTCAATTGGCATCAACTTGCAAACCCATTGTAGGCTTCCATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis