Browse Element(s) Details


OsAffx.18691.1.S1_at

Description tigr:9639.m00480
TID=OsAffx.18691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0564011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein
LOC_Os11g05614Os.54623.1.S2_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05614Os.54623.1.S1_at11/1111+2546455..2548851NAC-domain containing protein 90, putative, expressed
LOC_Os11g05630OsAffx.30829.2.S1_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05630OsAffx.30829.2.S1_x_at1/1111+2550135..2550680SOS2-like protein kinase, putative
LOC_Os11g05640OsAffx.18691.1.S1_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05640Os.57499.1.S1_x_at11/1111+2556939..2559110bZIP transcription factor family protein, expressed
LOC_Os11g05650OsAffx.30830.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.8763.1.S1_at11/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05650Os.51912.1.S1_at10/1111+2561105..2564404mRNA decapping enzyme, putative, expressed
LOC_Os11g05660Os.55611.1.S1_s_at11/1111+2564900..2566295F-box domain containing protein, expressed
LOC_Os11g05680OsAffx.20484.1.S1_x_at1/1111+2573598..2574206hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18691.1.S1_at--281--5071Chr11:2558633..2558657 (25 bp)
GCAGCCGAGCTTCCTGTACACCGCG
LOC_Os11g05640
OsAffx.18691.1.S1_at--1144--5731Chr11:2558813..2558837 (25 bp)
GACGTACCCGCAGTCGTACCAAGAA
LOC_Os11g05640
OsAffx.18691.1.S1_at--82--9951Chr11:2558817..2558841 (25 bp)
TACCCGCAGTCGTACCAAGAACAGC
LOC_Os11g05640
OsAffx.18691.1.S1_at--667--2751Chr11:2558833..2558857 (25 bp)
AAGAACAGCCGACGAGCAGCCCTGG
LOC_Os11g05640
OsAffx.18691.1.S1_at--127--5771Chr11:2558843..2558867 (25 bp)
GACGAGCAGCCCTGGCGGCGGGACG
LOC_Os11g05640
OsAffx.18691.1.S1_at--177--5771Chr11:2558883..2558907 (25 bp)
GACGACGACCCGTGCTCGCTGACAC
LOC_Os11g05640
OsAffx.18691.1.S1_at--282--531Chr11:2558913..2558937 (25 bp)
ATCGACGTCGACAAGAGGAGCGCGC
LOC_Os11g05640
OsAffx.18691.1.S1_at--877--4091Chr11:2558915..2558939 (25 bp)
CGACGTCGACAAGAGGAGCGCGCCT
LOC_Os11g05640
OsAffx.18691.1.S1_at--228--8091Chr11:2558961..2558985 (25 bp)
GGAGCTGGACAGCACGCCTCCATAA
LOC_Os11g05640
OsAffx.18691.1.S1_at--168--1511Chr11:2558971..2558995 (25 bp)
AGCACGCCTCCATAAGCGACAGGGA
LOC_Os11g05640
OsAffx.18691.1.S1_at--972--1811Chr11:2558974..2558998 (25 bp)
ACGCCTCCATAAGCGACAGGGAGAA
LOC_Os11g05640
Target Sequence 
GCAGCCGAGCTTCCTGTACACCGCGGCGCCGGCGGGCGTGGCGCCGGTGCCGTACGTGTGGGGCTCGTGGCCGCCGTGCG
GGCCGACGGGGTACGAGCCGCCGCCGCCGCTCTGCCTCCCGCCCTGCGCGTGGTACTACCCCGTCGTCGCCGATCCGCGC
GTGTCCTCGCCGCCGACGTCGACGTACCCGCAGTCGTACCAAGAACAGCCGACGAGCAGCCCTGGCGGCGGGACGGCCGA
GGAGGACACCGACGACGACCCGTGCTCGCTGACACTCGCCATCGACGTCGACAAGAGGAGCGCGCCTGGCGCCGGCGGCA
GCGCGGCCGGAGCTGGACAGCACGCCTCCATAAGCGACAGGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis