Browse Element(s) Details


OsAffx.18706.1.S1_at

Description tigr:9633.m00870
TID=OsAffx.18706.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0959011/11hypothetical protein
LOC_Os11g063601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein
LOC_Os05g09550Os.148.1.S1_at4/115+5373736..5377429Der1-like family protein, expressed
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18706.1.S1_at--288--1711Chr05:5396739..5396763 (25 bp)
ACCAAACCGCATTCTTCACTGACGG
LOC_Os05g09590
OsAffx.18706.1.S1_at--935--2371Chr05:5396742..5396766 (25 bp)
AAACCGCATTCTTCACTGACGGCGG
LOC_Os05g09590
OsAffx.18706.1.S1_at--211--4951Chr05:5396747..5396771 (25 bp)
GCATTCTTCACTGACGGCGGCAAAG
LOC_Os05g09590
OsAffx.18706.1.S1_at--1017--112Chr05:5396749..5396773 (25 bp)
ATTCTTCACTGACGGCGGCAAAGAG
LOC_Os05g09590
OsAffx.18706.1.S1_at--153--5131Chr05:5396766..5396790 (25 bp)
GCAAAGAGGCCGCTCGAGGACGAGG
LOC_Os05g09590
OsAffx.18706.1.S1_at--731--3611Chr05:5396804..5396828 (25 bp)
CTTGGGCGGCCCTAGTGTCAATGTG
LOC_Os05g09590
OsAffx.18706.1.S1_at--1102--4671Chr05:5396809..5396833 (25 bp)
GCGGCCCTAGTGTCAATGTGGATGG
LOC_Os05g09590
OsAffx.18706.1.S1_at--1115--8552Chr05:5396831..5396855 (25 bp)
TGGATGTGGGCCGTTGTATGCCCTC
LOC_Os05g09590
OsAffx.18706.1.S1_at--590--4031Chr05:5396842..5396866 (25 bp)
CGTTGTATGCCCTCGGGCTCATCAG
LOC_Os05g09590
OsAffx.18706.1.S1_at--125--9611Chr05:5396860..5396884 (25 bp)
TCATCAGCTCCGTCATCGCCGACGG
LOC_Os05g09590
OsAffx.18706.1.S1_at--233--4292Chr05:5397046..5397070 (25 bp)
CCTCCATTGCCCTCTTGCTCGGGAA
LOC_Os05g09590
Target Sequence 
ACCAAACCGCATTCTTCACTGACGGCGGCAAAGAGGCCGCTCGAGGACGAGGACGACGATGATGACTTGGGCGGCCCTAG
TGTCAATGTGGATGGATGTGGGCCGTTGTATGCCCTCGGGCTCATCAGCTCCGTCATCGCCGACGGCGCTGGCAAACACC
GCCNTGGTGGNCGTACTCGGCGTCGCAGCCCACACCTCCGCNGTCCTATCCCTGCTGCTNCTCGCCGTCGAGGTTGCNGC
CTACCTCCAGGGGTGGAACCTCGAGGAGGTGGCGTCACTCCCCGCNNTCGACGGCCTCTTCGCCGCGCCTCCATTGCCCT
CTTGCTCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis