Browse Element(s) Details


OsAffx.18765.1.S1_at

Description tigr:9639.m00900
TID=OsAffx.18765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0957011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09510OsAffx.18763.1.S1_at11/1111+5092787..5095348F-box domain containing protein
LOC_Os11g09520NANA11+5099306..5100973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530OsAffx.30900.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09530Os.46601.1.S1_at1/1111+5102435..5104871retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09540OsAffx.30900.1.S1_at11/1111+5106065..5106358hypothetical protein
LOC_Os11g09550NANA11+5107047..5108968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09560NANA11+5116547..5116843hypothetical protein
LOC_Os11g09570OsAffx.18765.1.S1_at11/1111+5117672..5118758hypothetical protein
LOC_Os11g09580NANA11+5121038..5122933F-box domain containing protein
LOC_Os11g09590Os.14731.1.S1_at10/1111+5124780..5127442F-box domain containing protein
LOC_Os11g09600OsAffx.30901.1.S1_at11/1111+5131169..5133396F-box domain containing protein
LOC_Os11g09610OsAffx.18766.1.S1_at11/1111+5134377..5134731hypothetical protein
LOC_Os11g09620OsAffx.30902.1.S1_at11/1111+5136909..5140810F-box domain containing protein
LOC_Os11g09630OsAffx.30903.1.S1_at11/1111+5142712..5145486F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18765.1.S1_at--855--4451Chr11:5118148..5118172 (25 bp)
GCCTACTGGCTGTGCGTGTCGAACG
LOC_Os11g09570
OsAffx.18765.1.S1_at--1081--7231Chr11:5118022..5118046 (25 bp)
GTCGCCAAGCCGAGCCTGGAGATGC
LOC_Os11g09570
OsAffx.18765.1.S1_at--726--5871Chr11:5118011..5118035 (25 bp)
GAGCCTGGAGATGCTCCTCGTGTCG
LOC_Os11g09570
OsAffx.18765.1.S1_at--799--4611Chr11:5117953..5117977 (25 bp)
GCGAGGCGGCACGAGATATCGATCT
LOC_Os11g09570
OsAffx.18765.1.S1_at--197--6511Chr11:5117939..5117963 (25 bp)
GATATCGATCTGGACGCTGTCGTCG
LOC_Os11g09570
OsAffx.18765.1.S1_at--689--7291Chr11:5117779..5117803 (25 bp)
GTGCTTTTCCGGCTCTACCATGGCT
LOC_Os11g09570
OsAffx.18765.1.S1_at--1162--4791Chr11:5117768..5117792 (25 bp)
GCTCTACCATGGCTGCCTCTTCGAG
LOC_Os11g09570
OsAffx.18765.1.S1_at--553--10632Chr11:5117749..5117773 (25 bp)
TTCGAGCTCAGCTTGGCGACAATGG
LOC_Os11g09570
OsAffx.18765.1.S1_at--558--2973Chr04:29722913..29722937 (25 bp)
AATGGAGGTCAGGTTCATCGGCTAC
NONE
OsAffx.18765.1.S1_at--463--7893Chr04:29722924..29722943 (20 bp)
GGTTCATCGGCTACTATTCCAAGAG
NONE
OsAffx.18765.1.S1_at--1037--71Chr11:5117703..5117727 (25 bp)
ATTCCAAGAGAGACACGTCGTCGAT
LOC_Os11g09570
Target Sequence 
GCCTACTGGCTGTGCGTGTCGAACGCCGCGGACCTCGGCTGCTACGTCCTCGCGCTCCGCCTCGACGCGTCGTCGTCGCC
GGCGGCGGCGCAGATCGAGCTCCCCCCGCGCTCGCACCTCGGGCGCGTCGCCAAGCCGAGCCTGGAGATGCTCCTCGTGT
CGCCGCCGTCCGACGGGACGCTCGGCCTCGCCGTGGCGAGGCGGCACGAGATATCGATCTGGACGCTGTCGTCGGCGGCG
GCGGCGGCGAGGTGGACGCAGCGCGCCGTGGTGGACCTGGCGAGGATGGCGGCGCCGGAGGAGATGCTGCCGCCATTGAC
GGCGGGCGAGGAGGTCCGGCTCGAGTGCTTCGCGGAGAGCAGCGGCGCGGTGCTTTTCCGGCTCTACCATGGCTGCCTCT
TCGAGCTCAGCTTGGCGACAATGGAGGTCAGGTTCATCGGCTACTATTCCAAGAGAGACACGTCGTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis