Browse Element(s) Details


OsAffx.18849.1.S1_at

Description tigr:9639.m01334
TID=OsAffx.18849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1449011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14460OsAffx.20387.1.S1_x_at1/1111+8110412..8118596retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g14470NANA11+8125514..8126172hAT family dimerisation domain containing protein
LOC_Os11g14480NANA11+8127130..8127888Ank repeat PF|00023 containing protein, putative
LOC_Os11g14490OsAffx.18849.1.S1_at11/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_at3/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_s_at1/1111+8135179..8135930hypothetical protein
LOC_Os11g14500NANA11+8138732..8139568hypothetical protein
LOC_Os11g14510Os.14919.1.S1_at6/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_s_at5/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.29313.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_x_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510Os.56216.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14520OsAffx.30976.1.S1_at11/1111+8150211..8153716hypothetical protein
LOC_Os11g14530OsAffx.18850.1.S1_at11/1111+8156446..8157113hypothetical protein
LOC_Os11g14544Os.11271.1.S1_a_at11/1111+8158813..8165571expressed protein
LOC_Os11g14544Os.11271.2.S1_at11/1111+8158813..8165571expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18849.1.S1_at--390--2831Chr11:8135840..8135864 (25 bp)
AAGTTCACGCTCGAGTCGTTCATCA
LOC_Os11g14490
OsAffx.18849.1.S1_at--211--6111Chr11:8135828..8135852 (25 bp)
GAGTCGTTCATCACGCTCAATATGT
LOC_Os11g14490
OsAffx.18849.1.S1_at--1083--6731Chr11:8135823..8135847 (25 bp)
GTTCATCACGCTCAATATGTTCGTT
LOC_Os11g14490
OsAffx.18849.1.S1_at--1111--1811Chr11:8135816..8135840 (25 bp)
ACGCTCAATATGTTCGTTGGCTTCC
LOC_Os11g14490
OsAffx.18849.1.S1_at--491--3111Chr11:8135810..8135834 (25 bp)
AATATGTTCGTTGGCTTCCACCAGT
LOC_Os11g14490
OsAffx.18849.1.S1_at--534--8071Chr11:8135755..8135779 (25 bp)
GGAGCTCCTATGACCGGCGACGGTT
LOC_Os11g14490
OsAffx.18849.1.S1_at--1084--10631Chr11:8135720..8135744 (25 bp)
TTCGCGGAGCTTAAGGCGGCACCAG
LOC_Os11g14490
OsAffx.18849.1.S1_at--7--5091Chr11:8135702..8135726 (25 bp)
GCACCAGCGGCAGAGTTCCTCGACG
LOC_Os11g14490
OsAffx.18849.1.S1_at--960--4571Chr11:8135657..8135681 (25 bp)
GCGCTCGACGAGTTCCCGTGCGACG
LOC_Os11g14490
OsAffx.18849.1.S1_at--175--1931Chr11:8135407..8135431 (25 bp)
ACGGTGACAGTGACACAGCGCTGGG
LOC_Os11g14490
OsAffx.18849.1.S1_at--714--7371Chr11:8135372..8135396 (25 bp)
GTGACCGCGCTGTCGGGTTCACCGT
LOC_Os11g14490
Target Sequence 
AAGTTCACGCTCGAGTCGTTCATCACGCTCAATATGTTCGTTGGCTTCCACCAGTGGGACTTCGGCCTGAGCGCCCTCCA
CGACCGGAGCTCCTATGACCGGCGACGGTTCTTCGACGAGTTCGCGGAGCTTAAGGCGGCACCAGCGGCAGAGTTCCTCG
ACGCGCGGAGCTCGCGGTGGGGCGCGCTCGACGAGTTCCCGTGCGACGGGCGGCTGCCGGGGGGCGATATGGACGCCAAC
GGTGACAGTGACACAGCGCTGGGGGCGGCAGCGGTGACCGCGCTGTCGGGTTCACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis