Browse Element(s) Details


OsAffx.18987.1.S1_at

Description tigr:9639.m02149
TID=OsAffx.18987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2434011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24290OsAffx.7186.1.S1_at11/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24290Os.37752.1.S1_at1/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24300OsAffx.31761.2.S1_at11/1111+13344376..13348496hypothetical protein
LOC_Os11g24300OsAffx.10665.2.S1_at1/1111+13344376..13348496hypothetical protein
LOC_Os11g24310OsAffx.31108.1.S1_at11/1111+13350550..13350876hypothetical protein
LOC_Os11g24320OsAffx.31109.1.S1_at11/1111+13352448..13356167hypothetical protein
LOC_Os11g24330NANA11+13357999..13360105retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24340OsAffx.18987.1.S1_at11/1111+13364180..13368847Serine carboxypeptidase family protein, expressed
LOC_Os11g24350OsAffx.7149.1.S1_at1/1111+13371643..13379209retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24360NANA11+13389808..13390206hypothetical protein
LOC_Os11g24389Os.48418.1.S1_at11/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389OsAffx.29148.1.S1_at2/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389Os.51416.1.S1_at1/1111+13390545..13415272Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18987.1.S1_at--625--4371Chr11:13368067..13368180 (25 bp)
CCAACTGGTTCGGTGGCCATCCTGA
LOC_Os11g24340
OsAffx.18987.1.S1_at--746--8891Chr11:13368045..13368069 (25 bp)
TGAGTACCTCACGAATCCGTTCTAC
LOC_Os11g24340
OsAffx.18987.1.S1_at--445--7191Chr11:13368020..13368044 (25 bp)
GTCGGGCGAGACTCTTATGCCGGAA
LOC_Os11g24340
OsAffx.18987.1.S1_at--12--2771Chr11:13367884..13367906 (23 bp)
AAGACCGACTCTTAATCTCAAGGGC
LOC_Os11g24340
OsAffx.18987.1.S1_at--73--531Chr11:13367356..13367380 (25 bp)
ATCGACTACGAATCAAAGGTGCCAT
LOC_Os11g24340
OsAffx.18987.1.S1_at--658--7271Chr11:13367338..13367362 (25 bp)
GTGCCATATCTCCATGGTGTCGGAA
LOC_Os11g24340
OsAffx.18987.1.S1_at--261--7331Chr11:13364801..13364825 (25 bp)
GTGCATTTATATGTCTCTCATCCCA
LOC_Os11g24340
OsAffx.18987.1.S1_at--520--4151Chr11:13364733..13364757 (25 bp)
GAATACTAAAGCATCGACCTCCGCG
LOC_Os11g24340
OsAffx.18987.1.S1_at--1153--7411Chr11:13364467..13364718 (25 bp)
GTGTTAGCTATTCCAACTATTTGTC
LOC_Os11g24340
OsAffx.18987.1.S1_at--671--10251Chr11:13364437..13364461 (25 bp)
TTTGGGCCAACGATAACGTCACACG
LOC_Os11g24340
OsAffx.18987.1.S1_at--745--6351Chr11:13364259..13364283 (25 bp)
GATGCCACGATAACGATCTACCGTA
LOC_Os11g24340
Target Sequence 
CCAACTGGTTCGGTGGCCATCCTGAGTACCTCACGAATCCGTTCTACGTCGGGCGAGACTCTTATGCCGGAAAGATCGTC
CCATTTATCGCGCAGAAGATCTCAGAAGATATTGAAGCGGGGGTAAGACCGACTCTTAATCTCAAGGGCTATGTAGTAGA
CAATCCAACTACAGGCGAAAGGATCGACTACGAATCAAAGGTGCCATATCTCCATGGTGTCGGAATCATTTCAGATCAAT
TGTACGAGCTACTAAATGAAGTTTCAAAGCCCCACATTTTGTACAAGAAGTGCATTTATATGTCTCTCATCCCAAAATTT
GAGAGCATGGACAGAAAGATCCTGAAAGAGGAGCTTGGAATACTAAAGCATCGACCTCCGCGCCCTTCAATACAATGTGT
TAGCTATTCCAACTATTTGTCATATTTTTGGGCCAACGATAACGTCACACGAGAGTATCTCGGAATCAAGAAGGGAAGCG
TGGATGAATGGATTAGATGCCACGATAACGATCTACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis