Browse Element(s) Details


OsAffx.18990.1.S1_at

Description tigr:9639.m02161
TID=OsAffx.18990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2446011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24430OsAffx.7189.1.S1_at10/1111+13423830..13424303hypothetical protein
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein
LOC_Os11g24450Os.11670.1.S1_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450OsAffx.31123.1.S1_x_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450Os.37494.1.S1_x_at5/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein
LOC_Os11g24470NANA11+13452881..13453548transposon protein, putative, Pong sub-class
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein
LOC_Os11g24510Os.6594.1.S1_at10/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510OsAffx.3427.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510Os.4698.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18990.1.S1_at--409--111Chr11:13449365..13449389 (25 bp)
ATTCTGGAGCCACAACAAGTTGATC
LOC_Os11g24460
OsAffx.18990.1.S1_at--872--5411Chr11:13449449..13449473 (25 bp)
GAAGCCCATGAAGAGCAGTCTCATA
LOC_Os11g24460
OsAffx.18990.1.S1_at--522--651Chr11:13449537..13449561 (25 bp)
ATGCACCTATTGTTTCAATTCCTGG
LOC_Os11g24460
OsAffx.18990.1.S1_at--1064--3171Chr11:13449552..13449576 (25 bp)
CAATTCCTGGTAGATCCATTGTCAA
LOC_Os11g24460
OsAffx.18990.1.S1_at--987--151Chr11:13450116..13450140 (25 bp)
ATTTTATTCTCCCTTAATCCATTGC
LOC_Os11g24460
OsAffx.18990.1.S1_at--1030--71Chr11:13450136..13450160 (25 bp)
ATTGCCCCTGGAATTCACTGATCCT
LOC_Os11g24460
OsAffx.18990.1.S1_at--724--3331Chr11:13450151..13450175 (25 bp)
CACTGATCCTCCTAATTCTGGTGAT
LOC_Os11g24460
OsAffx.18990.1.S1_at--624--10611Chr11:13450166..13450190 (25 bp)
TTCTGGTGATGACACTGACGCTGCC
LOC_Os11g24460
OsAffx.18990.1.S1_at--860--6591Chr11:13450197..13450221 (25 bp)
GATTGTTCTATTCAGCTTCTACAGC
LOC_Os11g24460
OsAffx.18990.1.S1_at--548--7671Chr11:13450228..13450252 (25 bp)
GGGTTGATCTTTGTGGTCTTGGCAA
LOC_Os11g24460
OsAffx.18990.1.S1_at--477--8871Chr11:13450268..13450292 (25 bp)
TGAGGCCTTGACTTCCCAGACTAGA
LOC_Os11g24460
Target Sequence 
ATTCTGGAGCCACAACAAGTTGATCAACAAGGAAATGCTAATTTGGAAAATGCTGATGAAGATATGGGGGAGAACAGCAA
TAATGAAGCCCATGAAGAGCAGTCTCATAACATAAGTGTTGTTTCTCAACAATACTTAGGGGATTGGCAAATAATTCTAG
TTTTGCAAAGTCATGCACCTATTGTTTCAATTCCTGGTAGATCCATTGTCAATAAAGTGCAGGATGTATCTGGAACTATT
TTATCCTTGCTAGTTTACCCCCAATTCTGGAAATTGCTCAGTATCTATAGGGTGTGGGTAAGCCTAAGGAGAAAAACAAA
GGCCAAGAGTTCTAAGAAGCTTAAAGCTTTGGCTGAAGAGAGTGGTATTTTATTCTCCCTTAATCCATTGCCCCTGGAAT
TCACTGATCCTCCTAATTCTGGTGATGACACTGACGCTGCCCCCTTTGATTGTTCTATTCAGCTTCTACAGCAGATAGGG
GTTGATCTTTGTGGTCTTGGCAAGGAGGAGGTGTCAGCTGAGGCCTTGACTTCCCAGACTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis