Browse Element(s) Details


OsAffx.19117.1.S1_at

Description tigr:9639.m02938
TID=OsAffx.19117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3234011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein
LOC_Os11g32370OsAffx.19119.1.S1_at11/1111+18620555..18622041hypothetical protein
LOC_Os11g32380OsAffx.7275.1.S1_at11/1111+18625705..18626385hypothetical protein
LOC_Os11g32390Os.54073.1.S1_at5/1111+18627166..18628828hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19117.1.S1_at--468--4151Chr11:18602875..18603147 (25 bp)
CGCGATCGCCGTGGTTGAGAATGCC
LOC_Os11g32340
OsAffx.19117.1.S1_at--53--6391Chr11:18602872..18603144 (25 bp)
GATCGCCGTGGTTGAGAATGCCATG
LOC_Os11g32340
OsAffx.19117.1.S1_at--469--10771Chr11:18602861..18602885 (25 bp)
TTGAGAATGCCATGGCGGACCTTGC
LOC_Os11g32340
OsAffx.19117.1.S1_at--40--591Chr11:18602855..18602879 (25 bp)
ATGCCATGGCGGACCTTGCGGCCGT
LOC_Os11g32340
OsAffx.19117.1.S1_at--66--8371Chr11:18602826..18602850 (25 bp)
GGCGTTGATGTCGAGGTCCGATCTC
LOC_Os11g32340
OsAffx.19117.1.S1_at--1142--10771Chr11:18602822..18602846 (25 bp)
TTGATGTCGAGGTCCGATCTCTCAA
LOC_Os11g32340
OsAffx.19117.1.S1_at--798--8711Chr11:18602818..18602842 (25 bp)
TGTCGAGGTCCGATCTCTCAACCGT
LOC_Os11g32340
OsAffx.19117.1.S1_at--733--9471Chr11:18602803..18602827 (25 bp)
TCTCAACCGTCAGGACGAGGCCGGA
LOC_Os11g32340
OsAffx.19117.1.S1_at--158--2611Chr11:18602799..18602823 (25 bp)
AACCGTCAGGACGAGGCCGGACGCA
LOC_Os11g32340
OsAffx.19117.1.S1_at--640--4311Chr11:18602765..18602789 (25 bp)
CCTTGACGGAGGCAGTGGACATCAA
LOC_Os11g32340
OsAffx.19117.1.S1_at--565--1931Chr11:18602760..18602784 (25 bp)
ACGGAGGCAGTGGACATCAACTGGC
LOC_Os11g32340
Target Sequence 
CGCGATCGCCGTGGTTGAGAATGCCATGGCGGACCTTGCGGCCGTCGGCGGCGTTGATGTCGAGGTCCGATCTCTCAACC
GTCAGGACGAGGCCGGACGCATCCTCTCCGCCTTGACGGAGGCAGTGGACATCAACTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis