Browse Element(s) Details


OsAffx.19153.1.S1_at

Description tigr:9639.m03097
TID=OsAffx.19153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3438011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein
LOC_Os11g34390OsAffx.31295.1.S1_at11/1111+19651224..19652722Glycosyltransferase 6, putative, expressed
LOC_Os11g34400Os.47130.4.A1_x_at1/1111+19655918..19656244retrotransposon protein, putative, unclassified
LOC_Os11g34410NANA11+19657235..19662874retrotransposon protein, putative, unclassified
LOC_Os11g34420Os.28943.1.S1_x_at2/1111+19663496..19666719retrotransposon protein, putative, unclassified
LOC_Os11g34430Os.47130.4.A1_x_at1/1111+19667659..19667985retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19153.1.S1_at--539--9591Chr11:19647126..19647150 (25 bp)
TCATTGTCCTCAACGTCAAAGGGCT
LOC_Os11g34380
OsAffx.19153.1.S1_at--597--7091Chr11:19647140..19647164 (25 bp)
GTCAAAGGGCTGGTGCGGTCTCTTC
LOC_Os11g34380
OsAffx.19153.1.S1_at--214--9691Chr11:19647190..19647214 (25 bp)
TCACGGATCACGTCCTCGCTGACAA
LOC_Os11g34380
OsAffx.19153.1.S1_at--898--91Chr11:19647587..19647611 (25 bp)
ATTCCCATCGTTCATGGATGCACGC
LOC_Os11g34380
OsAffx.19153.1.S1_at--64--9671Chr11:19647614..19647638 (25 bp)
TCAGCTCCCGCTTGAAGATATCATG
LOC_Os11g34380
OsAffx.19153.1.S1_at--333--671Chr11:19647636..19647660 (25 bp)
ATGAAGGGCTCTCAACCGGCAGAAA
LOC_Os11g34380
OsAffx.19153.1.S1_at--1052--8251Chr11:19647653..19647677 (25 bp)
GGCAGAAACTGCTTCCGTGTTCGTC
LOC_Os11g34380
OsAffx.19153.1.S1_at--780--8791Chr11:19647670..19647694 (25 bp)
TGTTCGTCGCAGACACCGTCAGCGG
LOC_Os11g34380
OsAffx.19153.1.S1_at--747--5031Chr11:19647712..19647736 (25 bp)
GCAGCAACAACGGTTCTGGTGGCGT
LOC_Os11g34380
OsAffx.19153.1.S1_at--187--7171Chr11:19647762..19647786 (25 bp)
GTCTCCGGCAAAAACAACTCGCGAA
LOC_Os11g34380
OsAffx.19153.1.S1_at--427--2211Chr11:19647775..19647799 (25 bp)
ACAACTCGCGAAACCACGGCTGTGG
LOC_Os11g34380
Target Sequence 
TCATTGTCCTCAACGTCAAAGGGCTGGTGCGGTCTCTTCCTCGTCGTCTTCGGCAAGTACGCGCTCACGGATCACGTCCT
CGCTGACAACTCTCACCTCAACCACAAACCATTCCCATCGTTCATGGATGCACGCTCTCAGCTCCCGCTTGAAGATATCA
TGAAGGGCTCTCAACCGGCAGAAACTGCTTCCGTGTTCGTCGCAGACACCGTCAGCGGCGCCTCTCGTCCCGCTAGCAGC
AACAACGGTTCTGGTGGCGTTCCCCAGAACTCGACCAACGGCTCCGTCTCCGGCAAAAACAACTCGCGAAACCACGGCTG
TGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis