Browse Element(s) Details


OsAffx.19220.1.S1_at

Description tigr:9639.m03409
TID=OsAffx.19220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F1N19.25
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g376509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37600NANA11+21694010..21696875transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g37610OsAffx.7328.3.S1_at9/1111+21698087..21701323hypothetical protein
LOC_Os11g37610OsAffx.7328.2.S1_at1/1111+21698087..21701323hypothetical protein
LOC_Os11g37620OsAffx.31348.1.S1_at11/1111+21702411..21703353hypothetical protein
LOC_Os11g37630OsAffx.31349.1.S1_x_at11/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.31349.2.S1_x_at10/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.1.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37630OsAffx.15454.2.S1_x_at1/1111+21706956..21711324hypothetical protein
LOC_Os11g37640Os.11161.1.S1_at11/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640OsAffx.19219.1.S1_at10/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37640Os.39305.1.A1_x_at1/1111+21714468..21717796ADP-ribosylation factor-like protein 5, putative, expressed
LOC_Os11g37650OsAffx.19220.1.S1_at9/1111+21720431..21725273hypothetical protein
LOC_Os11g37660OsAffx.7329.1.S1_at11/1111+21727528..21729717pentatricopeptide, putative, expressed
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19220.1.S1_at--259--9951Chr11:21720542..21720566 (25 bp)
TACCGGGACAGCTGGTTCGACAAGC
LOC_Os11g37650
OsAffx.19220.1.S1_at--442--9331Chr11:21720567..21720591 (25 bp)
TCGCCATTGGTTACCTGTCCAGGAA
LOC_Os11g37650
OsAffx.19220.1.S1_at--23--6011Chr11:21722191..21722215 (25 bp)
GAGAGCCTGATAGATGCCGCCCTAG
LOC_Os11g37650
OsAffx.19220.1.S1_at--11--4631Chr11:21722249..21722273 (25 bp)
GCGAGATTGTGACCCAAGCTCTTGA
LOC_Os11g37650
OsAffx.19220.1.S1_at--632--10691NONE
TTCCAAGCTACATCCTCACAATGAT
NONE
OsAffx.19220.1.S1_at--859--8851Chr11:21722531..21722555 (25 bp)
TGATGCCACCTTCAAGATTTTCCAG
LOC_Os11g37650
OsAffx.19220.1.S1_at--903--9891Chr11:21722560..21722584 (25 bp)
TACTTTGCTGCATTCACCACGATAT
LOC_Os11g37650
OsAffx.19220.1.S1_at--935--2631Chr11:21723634..21723658 (25 bp)
AACCTTTGCAAGATTCCATGCCAGA
LOC_Os11g37650
OsAffx.19220.1.S1_at--439--7811NONE
GGTCTACATGTCTCCCAATTTTGAA
NONE
OsAffx.19220.1.S1_at--341--2631Chr11:21725099..21725123 (25 bp)
AACCTCCTGAAGATGACCCTGCATT
LOC_Os11g37650
OsAffx.19220.1.S1_at--943--5071Chr11:21725127..21725150 (24 bp)
GCAGCCATGCTTCCGGACAAAATGC
LOC_Os11g37650
Target Sequence 
TACCGGGACAGCTGGTTCGACAAGCTCGCCATTGGTTACCTGTCCAGGAACCTTCAAGAAGCTTCTGGGCTAAAGAATGA
AAAGGATGGCTACGAGAGCCTGATAGATGCCGCCCTAGCCATCTCAAGAATCTTCAGTCTGGATAAACAAAGCGAGATTG
TGACCCAAGCTCTTGAAAGAGCACTTCCAAGCTACATCCTCACAATGATCAAGGTGATGATGCCACCTTCAAGATTTTCC
AGGGAGTACTTTGCTGCATTCACCACGATATTTTTTCCTTGGTTGGTTGGGCCGTGTGAGGTTATGGAATCTGAAGTTGA
AGGAAGGAAAGAGAAAAACGTGGTATATATCCCCAAATGCAGATTTCTGGAAAGTACAAATTGTGTTGGTATGTGCACAA
ACCTTTGCAAGATTCCATGCCAGAAGTTCATCCAAGATTCACTTGGCATGAAGGTCTACATGTCTCCCAATTTTGAAGAC
ATGAGCTGTGAGATGATATTTGGACAGCAACCTCCTGAAGATGACCCTGCATTGAAGCAGCCATGCTTCCGGACAAAATG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis