Browse Element(s) Details


OsAffx.19258.2.S1_x_at

Description tigr:9639.m03620
TID=OsAffx.19258.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3966011/11hAT family dimerisation domain containing protein
LOC_Os08g2320010/11hAT family dimerisation domain containing protein
LOC_Os05g5053010/11hypothetical protein
LOC_Os06g448003/11hAT family dimerisation domain containing protein, expressed
LOC_Os02g309603/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39609OsAffx.31390.1.S1_at11/1111+23095598..23096935F-box domain containing protein
LOC_Os11g39618OsAffx.30510.1.S1_at1/1111+23097296..23099440S1 self-incompatibility locus-linked pollen G211 protein, putative
LOC_Os11g39630OsAffx.19257.1.S1_at11/1111+23100472..23102972hypothetical protein
LOC_Os11g39640Os.27217.1.A1_at11/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39640OsAffx.13463.1.S1_at1/1111+23109534..23111540Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39650Os.20727.1.S1_at11/1111+23113750..23117939St12p protein, putative, expressed
LOC_Os11g39660OsAffx.19258.2.S1_x_at11/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660OsAffx.24518.2.S1_x_at2/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39660Os.57200.1.S1_x_at1/1111+23121689..23124219hAT family dimerisation domain containing protein
LOC_Os11g39670Os.54818.1.S1_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39670Os.53877.1.S1_x_at10/1111+23126858..23131260seryl-tRNA synthetase family protein, expressed
LOC_Os11g39680OsAffx.31391.1.S1_at11/1111+23134150..23134689hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39690OsAffx.7359.1.S1_x_at11/1111+23138929..23139138hypothetical protein
LOC_Os11g39699OsAffx.30582.1.S1_s_at2/1111+23146586..23147544NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19258.2.S1_x_at--881--5032Chr11:23123635..23123659 (25 bp)
GCAGATTTCTCATTGTTTGGCAGTG
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--909--7477Chr11:23123657..23123681 (25 bp)
GTGGGTTTAATTCCTTTGACTCAAT
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--715--10112Chr11:23123725..23123749 (25 bp)
TATGGTAACTCTGCACCTGAGCTTA
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--1005--4393Chr11:23123778..23123802 (25 bp)
GCCAACATCATCTTCTTGTGCCGAA
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--245--173Chr11:23123871..23123940 (25 bp)
ATTTAGTTTCCTTCTTAGGCCTGCA
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--441--2453Chr11:23123969..23123993 (25 bp)
AAAATATGCGTCTTCTTTCTAGGAG
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--631--5373Chr11:23123998..23124022 (25 bp)
GAAGAATACTACAGTGGCCCATCAA
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--844--7733Chr11:23124064..23124088 (25 bp)
GGTGGTGCTGATTTTCTTCAACAAG
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--351--5475Chr11:23124091..23124115 (25 bp)
GAACTGACACTTGATGAGCCTGACC
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--942--8913Chr11:23124105..23124129 (25 bp)
TGAGCCTGACCTTGAGAGACTACTG
LOC_Os11g39660
OsAffx.19258.2.S1_x_at--604--5357Chr11:23124130..23124154 (25 bp)
GAAGATCTTGGTGCATTGGACATAC
LOC_Os11g39660
Target Sequence 
GCAGATTTCTCATTGTTTGGCAGTGGGTTTAATTCCTTTGACTCAATTGAGGATAGAGCCCATATGAATGCAAAGCAATG
GTGGGGAATCTATGGTAACTCTGCACCTGAGCTTAAAAAGTTGGCACTAAAATTACTTGGACAGCCAACATCATCTTCTT
GTGCCGAAAGAAACTGGAGCACTTATGGTTTCATCCATAGTTCAATGAGAAACAAGTTTAGTTCCTTCTCTTACTTATTT
AGTTTCCTTCTTAGGCCTGCACGTGCTGAGGATTTGGTGTTTGTGCACCAAAATATGCGTCTTCTTTCTAGGAGATCTGA
AGAATACTACAGTGGCCCATCAATAATGTGGGATGTTGCAGGAGATAGATATGAGTTGTTTGATGGTGGTGCTGATTTTC
TTCAACAAGCTGAACTGACACTTGATGAGCCTGACCTTGAGAGACTACTGGAAGATCTTGGTGCATTGGACATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19258.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis