Browse Element(s) Details


OsAffx.19282.1.S1_at

Description tigr:9639.m03735
TID=OsAffx.19282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4074011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40709NANA11+23845250..23845517NA
LOC_Os11g40720OsAffx.22848.4.S1_at2/1111+23852705..23853913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40720OsAffx.22848.4.S1_x_at2/1111+23852705..23853913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40720OsAffx.22848.3.S1_x_at2/1111+23852705..23853913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40730NANA11+23854106..23858966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40740OsAffx.19282.1.S1_at11/1111+23865633..23866241expressed protein
LOC_Os11g40750OsAffx.19283.1.S1_at10/1111+23872620..23879307hypothetical protein
LOC_Os11g40760Os.51808.1.S1_at11/1111+23881605..23882716expressed protein
LOC_Os11g40760Os.53454.1.S1_x_at3/1111+23881605..23882716expressed protein
LOC_Os11g40770OsAffx.31410.1.S1_at11/1111+23883708..23884374expressed protein
LOC_Os11g40780OsAffx.31411.1.S1_at11/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40780OsAffx.19384.1.S1_x_at1/1111+23885930..23889094NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19282.1.S1_at--744--9491Chr11:23866087..23866111 (25 bp)
TCTCGCAGGAGAGCGTCGACGCGAT
LOC_Os11g40740
OsAffx.19282.1.S1_at--2--5791Chr11:23866050..23866074 (25 bp)
GACGAAGCCGTATCCCAACATGGAG
LOC_Os11g40740
OsAffx.19282.1.S1_at--1018--2111Chr11:23866033..23866057 (25 bp)
ACATGGAGTACTTCCGGAGCTTGAA
LOC_Os11g40740
OsAffx.19282.1.S1_at--525--8051Chr11:23866018..23866042 (25 bp)
GGAGCTTGAAGGACAACCCCGCCGT
LOC_Os11g40740
OsAffx.19282.1.S1_at--895--1451Chr11:23865976..23866000 (25 bp)
AGAAGACGATGCGTGCCGTCCGCTT
LOC_Os11g40740
OsAffx.19282.1.S1_at--1081--4411Chr11:23865947..23865971 (25 bp)
GCCAGGTCGCACGACAAGGTTCAGC
LOC_Os11g40740
OsAffx.19282.1.S1_at--199--4351Chr11:23865906..23865930 (25 bp)
CCAGGCATGGATCCGCAGCGAGCTT
LOC_Os11g40740
OsAffx.19282.1.S1_at--226--5331Chr11:23865876..23865900 (25 bp)
GAAGGGCTTTGTTGATGTCGACCAA
LOC_Os11g40740
OsAffx.19282.1.S1_at--1043--9351Chr11:23865859..23865883 (25 bp)
TCGACCAAGACAAGGCTGCGACCTT
LOC_Os11g40740
OsAffx.19282.1.S1_at--1047--5831Chr11:23865840..23865864 (25 bp)
GACCTTCACTGCTGTACACTGGAAA
LOC_Os11g40740
OsAffx.19282.1.S1_at--236--2331Chr11:23865818..23865842 (25 bp)
AAAGAGGAGCTCATGACGGACGATG
LOC_Os11g40740
Target Sequence 
TCTCGCAGGAGAGCGTCGACGCGATCCTCGCCGAGGAGACGAAGCCGTATCCCAACATGGAGTACTTCCGGAGCTTGAAG
GACAACCCCGCCGTGCCGCCGGAGCTGTACGAGAAGACGATGCGTGCCGTCCGCTTCGCCGCCAGGTCGCACGACAAGGT
TCAGCAAGGCATCCTCCGGCGCCAGGCATGGATCCGCAGCGAGCTTGAGGAGAAGGGCTTTGTTGATGTCGACCAAGACA
AGGCTGCGACCTTCACTGCTGTACACTGGAAAGAGGAGCTCATGACGGACGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis