Browse Element(s) Details


OsAffx.1932.1.S1_at

Description tigr:9629.m00382
TID=OsAffx.1932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RTNLB14w
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0464011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04660Os.16097.1.S1_a_at11/111+2093994..2097496Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g04670OsAffx.10908.1.S1_at11/111+2099100..2099402hypothetical protein
LOC_Os01g04680OsAffx.22792.1.S1_at6/111+2101993..2104641retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1932.1.S1_at--575--8751Chr01:2077972..2077996 (25 bp)
TGTACGAGAATTACGAGAGCGAGGT
LOC_Os01g04640
OsAffx.1932.1.S1_at--733--4051Chr01:2078140..2078164 (25 bp)
CGATCGATCGAGACCAATTAAGATT
LOC_Os01g04640
OsAffx.1932.1.S1_at--873--1371Chr01:2078150..2078174 (25 bp)
AGACCAATTAAGATTGCAGCATCGA
LOC_Os01g04640
OsAffx.1932.1.S1_at--929--3552Chr01:2078194..2078218 (25 bp)
CATCACATGCATGTGATGTGTACAT
LOC_Os01g04640
OsAffx.1932.1.S1_at--1066--6551Chr01:2078237..2078261 (25 bp)
GATTAAGAATATGATCCGTGCATGT
LOC_Os01g04640
OsAffx.1932.1.S1_at--307--271Chr01:2078245..2078269 (25 bp)
ATATGATCCGTGCATGTACATCCGA
LOC_Os01g04640
OsAffx.1932.1.S1_at--976--691Chr01:2078247..2078271 (25 bp)
ATGATCCGTGCATGTACATCCGAAA
LOC_Os01g04640
OsAffx.1932.1.S1_at--637--6371Chr01:2078249..2078273 (25 bp)
GATCCGTGCATGTACATCCGAAAGG
LOC_Os01g04640
OsAffx.1932.1.S1_at--557--4251Chr01:2078252..2078276 (25 bp)
CCGTGCATGTACATCCGAAAGGAAA
LOC_Os01g04640
OsAffx.1932.1.S1_at--959--5511Chr01:2078277..2078301 (25 bp)
GAAAAGGCTGTTACAAAGCTGTTCT
LOC_Os01g04640
OsAffx.1932.1.S1_at--31--8351Chr01:2078282..2078306 (25 bp)
GGCTGTTACAAAGCTGTTCTTCCAT
LOC_Os01g04640
Target Sequence 
TGTACGAGAATTACGAGAGCGAGGTCGACCACCTGGTGTCGACGGCGGTGCACGATCTCCGGAGCCACGTCGGCGACATC
GATTCTGGTGTTTTCAAGAAGATCCCAAGAGGGAGAGGAGCCACTGCAAATTGAATCAATTGATCAGCAACTAATCAACC
AAGGAGATCGATCGATCGAGACCAATTAAGATTGCAGCATCGATCGACCGTGCATGACCTAACATCACATGCATGTGATG
TGTACATATAACGCTCTTTAAACCGGATTAAGAATATGATCCGTGCATGTACATCCGAAAGGAAAGAAAAGGCTGTTACA
AAGCTGTTCTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis